miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 3' -55 NC_004812.1 + 105796 0.65 0.954321
Target:  5'- ----cGUCGCCGGggGGCuuggGGGUGGgggcUCCGg -3'
miRNA:   3'- gaacuUAGCGGCU--UCG----CCCACC----AGGC- -5'
21488 3' -55 NC_004812.1 + 13415 0.65 0.954321
Target:  5'- -gUGAcg-GCCGGAG-GGGUGG-CCGu -3'
miRNA:   3'- gaACUuagCGGCUUCgCCCACCaGGC- -5'
21488 3' -55 NC_004812.1 + 38602 0.66 0.950294
Target:  5'- --gGGGgucgCGCCGAguccgcGGCGGG-GGUCUc -3'
miRNA:   3'- gaaCUUa---GCGGCU------UCGCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 134090 0.66 0.950294
Target:  5'- --gGGggCGCCGAcgucGCGgugcgugacGGUGGUCCGc -3'
miRNA:   3'- gaaCUuaGCGGCUu---CGC---------CCACCAGGC- -5'
21488 3' -55 NC_004812.1 + 7701 0.66 0.950294
Target:  5'- --gGGGgucgCGCCGAguccgcGGCGGG-GGUCUc -3'
miRNA:   3'- gaaCUUa---GCGGCU------UCGCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 124466 0.66 0.946038
Target:  5'- ------cCGCCGcGGCGGG-GGcCCGg -3'
miRNA:   3'- gaacuuaGCGGCuUCGCCCaCCaGGC- -5'
21488 3' -55 NC_004812.1 + 41028 0.66 0.946038
Target:  5'- --cGggUCGCCGu-GgGGGUGGggUGg -3'
miRNA:   3'- gaaCuuAGCGGCuuCgCCCACCagGC- -5'
21488 3' -55 NC_004812.1 + 64342 0.66 0.946038
Target:  5'- --cGGA-CGCCGuGGCGGGccUGGagCCGg -3'
miRNA:   3'- gaaCUUaGCGGCuUCGCCC--ACCa-GGC- -5'
21488 3' -55 NC_004812.1 + 125164 0.66 0.94155
Target:  5'- ------gCGCCGggGCGGGaggcgggagGGcCCGg -3'
miRNA:   3'- gaacuuaGCGGCuuCGCCCa--------CCaGGC- -5'
21488 3' -55 NC_004812.1 + 123590 0.66 0.94155
Target:  5'- --cGAGUCGuCCGucgucgggcGGGCGGGcggcggaGGUCCGc -3'
miRNA:   3'- gaaCUUAGC-GGC---------UUCGCCCa------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 154491 0.66 0.94155
Target:  5'- --cGAGUCGuCCGucgucgggcGGGCGGGcggcggaGGUCCGc -3'
miRNA:   3'- gaaCUUAGC-GGC---------UUCGCCCa------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 156065 0.66 0.94155
Target:  5'- ------gCGCCGggGCGGGaggcgggagGGcCCGg -3'
miRNA:   3'- gaacuuaGCGGCuuCGCCCa--------CCaGGC- -5'
21488 3' -55 NC_004812.1 + 128486 0.66 0.941088
Target:  5'- ------gCGCCGAgacgucgGGCGGGccGGUCCa -3'
miRNA:   3'- gaacuuaGCGGCU-------UCGCCCa-CCAGGc -5'
21488 3' -55 NC_004812.1 + 54621 0.66 0.940157
Target:  5'- --cGAGUCGCgCGAccccccgcgcgggcGGCGGGc-GUCCGc -3'
miRNA:   3'- gaaCUUAGCG-GCU--------------UCGCCCacCAGGC- -5'
21488 3' -55 NC_004812.1 + 31634 0.66 0.936826
Target:  5'- ---cGGUCGCCGgcGgGGGUGGgggCGg -3'
miRNA:   3'- gaacUUAGCGGCuuCgCCCACCag-GC- -5'
21488 3' -55 NC_004812.1 + 69945 0.66 0.936826
Target:  5'- --gGAAUCggagGCCGAGG-GGG-GGUCUGu -3'
miRNA:   3'- gaaCUUAG----CGGCUUCgCCCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 11310 0.66 0.936826
Target:  5'- --cGGggCGCCGcgGGGCGGG-GG-CCGg -3'
miRNA:   3'- gaaCUuaGCGGC--UUCGCCCaCCaGGC- -5'
21488 3' -55 NC_004812.1 + 149097 0.66 0.936826
Target:  5'- --cGGcgCGCCGcgGGGCGGG-GGUUgGg -3'
miRNA:   3'- gaaCUuaGCGGC--UUCGCCCaCCAGgC- -5'
21488 3' -55 NC_004812.1 + 733 0.66 0.936826
Target:  5'- ---cGGUCGCCGgcGgGGGUGGgggCGg -3'
miRNA:   3'- gaacUUAGCGGCuuCgCCCACCag-GC- -5'
21488 3' -55 NC_004812.1 + 53930 0.66 0.936826
Target:  5'- --gGGAUCGaCGAcaucGGCGGGUgaGGUCaCGg -3'
miRNA:   3'- gaaCUUAGCgGCU----UCGCCCA--CCAG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.