miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 156551 0.67 0.589631
Target:  5'- gCGCGcGUGGCGCC-GCgCCGCCGcGCCc -3'
miRNA:   3'- -GUGC-CGUCGCGGaCGaGGUGGC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 156031 0.69 0.49359
Target:  5'- -cCGGagccGCGCCcgcgGCUCCACgCGGCCGc -3'
miRNA:   3'- guGCCgu--CGCGGa---CGAGGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 155107 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 154398 0.67 0.609368
Target:  5'- gGCGGCGG-GCCgggccgggGCUCCAa-GGCCGc -3'
miRNA:   3'- gUGCCGUCgCGGa-------CGAGGUggCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 154165 0.68 0.535134
Target:  5'- cCGCGGCGaggcgcacucgcaccGCGCCUGCgcgcgCUggggGCUGGCCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGa----GG----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 153737 0.68 0.550552
Target:  5'- cCACGGCGGUGCCgGCg-CGCaCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGagGUG-GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 153660 0.67 0.589631
Target:  5'- gGCGcGCAGgGCgUGCUCCugCucuCCAc -3'
miRNA:   3'- gUGC-CGUCgCGgACGAGGugGcu-GGU- -5'
21488 5' -61.6 NC_004812.1 + 153511 0.7 0.397072
Target:  5'- -uCGGCGGCGCCUcccccgccccGC-CCGCCugGACCGa -3'
miRNA:   3'- guGCCGUCGCGGA----------CGaGGUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 153214 0.68 0.540899
Target:  5'- aCACGcCGGCGCC--CUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCcGUCGCGGacGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 153188 0.71 0.349793
Target:  5'- gCGCGGCGGCGCCgGagggCCGCCGGg-- -3'
miRNA:   3'- -GUGCCGUCGCGGaCga--GGUGGCUggu -5'
21488 5' -61.6 NC_004812.1 + 153180 0.71 0.357388
Target:  5'- gGCGGCuGGCGCC-GCgugCCGCCGGggcCCAg -3'
miRNA:   3'- gUGCCG-UCGCGGaCGa--GGUGGCU---GGU- -5'
21488 5' -61.6 NC_004812.1 + 153077 0.67 0.615304
Target:  5'- -cCGGCccGGCGCCgcgGCcccgcccccggggCCGCCGGCCc -3'
miRNA:   3'- guGCCG--UCGCGGa--CGa------------GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 153024 0.67 0.599488
Target:  5'- -cCGGC-GCGCCcGC-CCGCCGccGCCGc -3'
miRNA:   3'- guGCCGuCGCGGaCGaGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 152974 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 152882 0.75 0.222131
Target:  5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 152806 0.73 0.293217
Target:  5'- -cCGGCGGCGCCgagGCcgccgucgCCGCCGugCGc -3'
miRNA:   3'- guGCCGUCGCGGa--CGa-------GGUGGCugGU- -5'
21488 5' -61.6 NC_004812.1 + 152730 0.67 0.609368
Target:  5'- gGCGGaggccgGGCGCUUGCgggCCGCggCGGCCGc -3'
miRNA:   3'- gUGCCg-----UCGCGGACGa--GGUG--GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152673 0.67 0.609368
Target:  5'- gGCGGCcgcgcGCGCCgUGCcgcgCCGCgCGGCCc -3'
miRNA:   3'- gUGCCGu----CGCGG-ACGa---GGUG-GCUGGu -5'
21488 5' -61.6 NC_004812.1 + 152640 0.74 0.23287
Target:  5'- cUACGGCGGCGaCCUGg-CCGCCGugCc -3'
miRNA:   3'- -GUGCCGUCGC-GGACgaGGUGGCugGu -5'
21488 5' -61.6 NC_004812.1 + 152600 0.67 0.579803
Target:  5'- uCACGGCcugccGCGCCgUGCUggaggCGCUGGCCGa -3'
miRNA:   3'- -GUGCCGu----CGCGG-ACGAg----GUGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.