Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 3' | -59.1 | NC_004812.1 | + | 63586 | 1.09 | 0.001116 |
Target: 5'- cUGCGGCUUCGUCAGGCGCAGCUGCACg -3' miRNA: 3'- -ACGCCGAAGCAGUCCGCGUCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 71324 | 0.84 | 0.074129 |
Target: 5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3' miRNA: 3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 43849 | 0.79 | 0.157891 |
Target: 5'- cGCGGCgccgaCGUcCGGGCGCGGCgGCGCc -3' miRNA: 3'- aCGCCGaa---GCA-GUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 30944 | 0.79 | 0.150063 |
Target: 5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3' miRNA: 3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 43 | 0.79 | 0.150063 |
Target: 5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3' miRNA: 3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 156453 | 0.79 | 0.150063 |
Target: 5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3' miRNA: 3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 32405 | 0.77 | 0.202787 |
Target: 5'- cGCGGCcUCGgucgccgccgCGGGCGCGGCcGCGCc -3' miRNA: 3'- aCGCCGaAGCa---------GUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 70128 | 0.76 | 0.218275 |
Target: 5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3' miRNA: 3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 149006 | 0.76 | 0.229153 |
Target: 5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3' miRNA: 3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 55455 | 0.76 | 0.229153 |
Target: 5'- cGCGGC--CGUCAGGuCGCAGaaGCGCa -3' miRNA: 3'- aCGCCGaaGCAGUCC-GCGUCgaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 106773 | 0.76 | 0.240486 |
Target: 5'- aGgGGCggCGUCGGGCGgGGC-GCGCg -3' miRNA: 3'- aCgCCGaaGCAGUCCGCgUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 23498 | 0.76 | 0.229153 |
Target: 5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3' miRNA: 3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 129725 | 0.75 | 0.270866 |
Target: 5'- cGCGGCggCGUCGGGCcggggGCGGCgGCGg -3' miRNA: 3'- aCGCCGaaGCAGUCCG-----CGUCGaCGUg -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 14363 | 0.75 | 0.258358 |
Target: 5'- uUGcCGGCcgCG-CGGGCGCGGCgGCGCa -3' miRNA: 3'- -AC-GCCGaaGCaGUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 129384 | 0.74 | 0.314157 |
Target: 5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3' miRNA: 3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 571 | 0.74 | 0.317751 |
Target: 5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3' miRNA: 3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 100513 | 0.74 | 0.314157 |
Target: 5'- aGCGGCguguaggcgcccaCGUCGGGCGCGGCgagGC-Cg -3' miRNA: 3'- aCGCCGaa-----------GCAGUCCGCGUCGa--CGuG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 127858 | 0.74 | 0.311304 |
Target: 5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3' miRNA: 3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 112794 | 0.74 | 0.311304 |
Target: 5'- gGCGGCUccccCGUCGGGCGUgugGGC-GCGCc -3' miRNA: 3'- aCGCCGAa---GCAGUCCGCG---UCGaCGUG- -5' |
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21499 | 3' | -59.1 | NC_004812.1 | + | 98434 | 0.74 | 0.304258 |
Target: 5'- gGCGGCcgCGgggcggCAGGCGCGGggGCGCc -3' miRNA: 3'- aCGCCGaaGCa-----GUCCGCGUCgaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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