miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 156453 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 156117 0.71 0.449537
Target:  5'- gGCGGCcgugagUUCGggcagCAGGCGCGuGC-GCACg -3'
miRNA:   3'- aCGCCG------AAGCa----GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 155108 0.7 0.505805
Target:  5'- cGCGGCggCG-CGGGC-CGGCcgGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCCGcGUCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 154833 0.69 0.564879
Target:  5'- cGC-GCUccCGUCggcgcgGGGCGCGGCUGCGa -3'
miRNA:   3'- aCGcCGAa-GCAG------UCCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 154751 0.66 0.764798
Target:  5'- cGCGGaggaG-CGGGcCGgGGCUGCGCg -3'
miRNA:   3'- aCGCCgaagCaGUCC-GCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 153855 0.68 0.635781
Target:  5'- gGCGGCgUUGcagagCGGGCaGCuGUUGCGCa -3'
miRNA:   3'- aCGCCGaAGCa----GUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 153436 0.69 0.564879
Target:  5'- gGCGGUga-GUCGGGgGCGGgggGCGCg -3'
miRNA:   3'- aCGCCGaagCAGUCCgCGUCga-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 153342 0.7 0.515483
Target:  5'- gGCGGCgucUCcUCGGGCGgCGGggGCGCg -3'
miRNA:   3'- aCGCCGa--AGcAGUCCGC-GUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 152883 0.67 0.696517
Target:  5'- cGCGGCccgCGcCAGGUGCGcuccGCcgGCGCc -3'
miRNA:   3'- aCGCCGaa-GCaGUCCGCGU----CGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 152649 0.66 0.730199
Target:  5'- cGCGGCgggggggCGcCGGGCcuccgggaggcggggGCAGCgaggGCGCu -3'
miRNA:   3'- aCGCCGaa-----GCaGUCCG---------------CGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 152617 0.7 0.535056
Target:  5'- aGCGGCggCGagagCAGGUGCccgGGCcgGCGCg -3'
miRNA:   3'- aCGCCGaaGCa---GUCCGCG---UCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 152125 0.69 0.544941
Target:  5'- cGCGccuGCUUCGaggccUCGGGCGC-GCgGCGCa -3'
miRNA:   3'- aCGC---CGAAGC-----AGUCCGCGuCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 150177 0.67 0.706503
Target:  5'- gGCGGUcccccCGcCGGGCG-GGCUGUACg -3'
miRNA:   3'- aCGCCGaa---GCaGUCCGCgUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 149695 0.67 0.696517
Target:  5'- -cCGGCc-CG-CGGGCGCAGC-GCGCc -3'
miRNA:   3'- acGCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 149568 0.67 0.720377
Target:  5'- cGCGGUccacagUCG-CGGcGCGCAGCUaucgaggaacccgcaGCGCg -3'
miRNA:   3'- aCGCCGa-----AGCaGUC-CGCGUCGA---------------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 149006 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 148528 0.72 0.422724
Target:  5'- gGCGGCgcgggcCGcCGGGCGCGGCgggGuCGCg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 148292 0.69 0.585004
Target:  5'- gGCGGCggCGcCGGccCGCuGCUGCGCu -3'
miRNA:   3'- aCGCCGaaGCaGUCc-GCGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 148282 0.67 0.706503
Target:  5'- gGCGGCUucucggcgcuccUCGUCGGcguacGCGCGGagcucccgGCGCa -3'
miRNA:   3'- aCGCCGA------------AGCAGUC-----CGCGUCga------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 147839 0.69 0.564879
Target:  5'- cGCGGggUUGUCgAGGCucucGCGGCUGCc- -3'
miRNA:   3'- aCGCCgaAGCAG-UCCG----CGUCGACGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.