miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 63586 1.09 0.001116
Target:  5'- cUGCGGCUUCGUCAGGCGCAGCUGCACg -3'
miRNA:   3'- -ACGCCGAAGCAGUCCGCGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 146411 0.71 0.431555
Target:  5'- cGCGGCcagcuccgCGUCGGGgcaGCAGUUGCGa -3'
miRNA:   3'- aCGCCGaa------GCAGUCCg--CGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 4147 0.71 0.449537
Target:  5'- gGCGGC--CGcCAGGCgGC-GCUGCGCg -3'
miRNA:   3'- aCGCCGaaGCaGUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 145531 0.66 0.768556
Target:  5'- gGCGGCUcgcggcgccccgguUCGcgcuggucccggggUCGGGCGCcaccGGCgGCGCc -3'
miRNA:   3'- aCGCCGA--------------AGC--------------AGUCCGCG----UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 70128 0.76 0.218275
Target:  5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3'
miRNA:   3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 23498 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 14363 0.75 0.258358
Target:  5'- uUGcCGGCcgCG-CGGGCGCGGCgGCGCa -3'
miRNA:   3'- -AC-GCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 18435 0.74 0.290534
Target:  5'- cGCGGCgggggccgCGUCcgguGGCGCGGCggggggGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGu---CCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3876 0.74 0.314157
Target:  5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 148528 0.72 0.422724
Target:  5'- gGCGGCgcgggcCGcCGGGCGCGGCgggGuCGCg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 2630 0.73 0.356169
Target:  5'- cGCGGCc----CAGGCGCGGCggcgGCGCg -3'
miRNA:   3'- aCGCCGaagcaGUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 2350 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 71324 0.84 0.074129
Target:  5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3'
miRNA:   3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 18819 0.72 0.396894
Target:  5'- gGCGGgUgugCGgCGGGCgGCGGUUGCGCg -3'
miRNA:   3'- aCGCCgAa--GCaGUCCG-CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 30944 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 4216 0.74 0.297334
Target:  5'- cGCGGCggCGUCGGGCucggggGCGGCgGCGg -3'
miRNA:   3'- aCGCCGaaGCAGUCCG------CGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 4408 0.72 0.414001
Target:  5'- gGCGGCcauggCGUagccCAGGUGCGGCacgGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA----GUCCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 156117 0.71 0.449537
Target:  5'- gGCGGCcgugagUUCGggcagCAGGCGCGuGC-GCACg -3'
miRNA:   3'- aCGCCG------AAGCa----GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 43849 0.79 0.157891
Target:  5'- cGCGGCgccgaCGUcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 106773 0.76 0.240486
Target:  5'- aGgGGCggCGUCGGGCGgGGC-GCGCg -3'
miRNA:   3'- aCgCCGaaGCAGUCCGCgUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.