Results 1 - 20 of 396 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 5' | -54.8 | NC_004812.1 | + | 63624 | 1.08 | 0.004216 |
Target: 5'- cCUGCGGCAGCAGCACGACGAAACUCGc -3' miRNA: 3'- -GACGCCGUCGUCGUGCUGCUUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 53053 | 0.75 | 0.500451 |
Target: 5'- -cGCGGCAGCuGCACcgccaGGCGgcGCUCa -3' miRNA: 3'- gaCGCCGUCGuCGUG-----CUGCuuUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 2882 | 0.75 | 0.510211 |
Target: 5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3' miRNA: 3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 66706 | 0.66 | 0.949272 |
Target: 5'- -cGCGGCGaaGGaCGCGGCGAAGaagaugccCUCGa -3' miRNA: 3'- gaCGCCGUcgUC-GUGCUGCUUU--------GAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3710 | 0.81 | 0.240591 |
Target: 5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 12895 | 0.81 | 0.261204 |
Target: 5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3' miRNA: 3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 2535 | 0.78 | 0.35012 |
Target: 5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3' miRNA: 3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 80483 | 0.78 | 0.35012 |
Target: 5'- -cGCGGCGGCGcGC-CGACG-AGCUCGa -3' miRNA: 3'- gaCGCCGUCGU-CGuGCUGCuUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 138289 | 0.77 | 0.425716 |
Target: 5'- cCUGCgGGCGGUGGuCGCGGCG-GGCUCGg -3' miRNA: 3'- -GACG-CCGUCGUC-GUGCUGCuUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 55282 | 0.75 | 0.500451 |
Target: 5'- uCUGCGGCgAGCGccuGCACGcCGAGguggGCUCGg -3' miRNA: 3'- -GACGCCG-UCGU---CGUGCuGCUU----UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 4240 | 0.76 | 0.471691 |
Target: 5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 130828 | 0.77 | 0.425716 |
Target: 5'- gCUGCGGCGGgGGCugACGACGGc-CUCGa -3' miRNA: 3'- -GACGCCGUCgUCG--UGCUGCUuuGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 138039 | 0.84 | 0.169631 |
Target: 5'- gUGCGGCGGCGGCgGCGGCGGAGCg-- -3' miRNA: 3'- gACGCCGUCGUCG-UGCUGCUUUGagc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3764 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3' miRNA: 3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 101043 | 0.82 | 0.202427 |
Target: 5'- gCUGCGuGCgcgAGCAGCGCGGCG-AGCUCGa -3' miRNA: 3'- -GACGC-CG---UCGUCGUGCUGCuUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 83196 | 0.77 | 0.382515 |
Target: 5'- -cGCGGCGGgaGGCGCGGCGGccgcGCUCGg -3' miRNA: 3'- gaCGCCGUCg-UCGUGCUGCUu---UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 107577 | 0.75 | 0.490775 |
Target: 5'- -gGCGGCGGCGGCGCGGuuGAcCUCGu -3' miRNA: 3'- gaCGCCGUCGUCGUGCUgcUUuGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 108248 | 0.75 | 0.500451 |
Target: 5'- -gGCGGCGGCGucCGCGGCGGAGCccUCGg -3' miRNA: 3'- gaCGCCGUCGUc-GUGCUGCUUUG--AGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 144052 | 0.81 | 0.233075 |
Target: 5'- gUGCGGCGGCGGCACGccgccgggggccugGCGGAGCUg- -3' miRNA: 3'- gACGCCGUCGUCGUGC--------------UGCUUUGAgc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 3933 | 0.8 | 0.271392 |
Target: 5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3' miRNA: 3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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