miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 156545 0.66 0.976918
Target:  5'- -gAGCCCGCcCGGGAgccCGcccAAACGCGCc -3'
miRNA:   3'- uaUCGGGCGcGCCUU---GU---UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 156515 0.69 0.913035
Target:  5'- -gGGCgCGCGCGGGGCcgGGAGCcCGCc -3'
miRNA:   3'- uaUCGgGCGCGCCUUG--UUUUGuGUGu -5'
21501 5' -52.1 NC_004812.1 + 156430 0.71 0.855981
Target:  5'- -cGGCgCGCGCGcGAAaauAAACGCGCGg -3'
miRNA:   3'- uaUCGgGCGCGC-CUUgu-UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 156309 0.72 0.791747
Target:  5'- --uGCCCGCGCucucgggcgcggccGGAcggcgGCGGAGCGCGCGc -3'
miRNA:   3'- uauCGGGCGCG--------------CCU-----UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 156211 0.71 0.81305
Target:  5'- -aGGCCUGCGCgcguggGGGGCGGGGCGcCGCGg -3'
miRNA:   3'- uaUCGGGCGCG------CCUUGUUUUGU-GUGU- -5'
21501 5' -52.1 NC_004812.1 + 156183 0.74 0.694316
Target:  5'- -gGGCgCGCGCGaGAGCGccGCGCGCGg -3'
miRNA:   3'- uaUCGgGCGCGC-CUUGUuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 156139 0.79 0.409844
Target:  5'- -cGGgCCGCGCGGAcgcggggcGCGGGACGCGCGg -3'
miRNA:   3'- uaUCgGGCGCGCCU--------UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 156056 0.66 0.976918
Target:  5'- -cGGCCgCGCGCgccGGGGCGGGAgGCGgGa -3'
miRNA:   3'- uaUCGG-GCGCG---CCUUGUUUUgUGUgU- -5'
21501 5' -52.1 NC_004812.1 + 156039 0.69 0.913035
Target:  5'- -gGGCCgCGcCGCGGGACGGGcgggcguCGCGCGg -3'
miRNA:   3'- uaUCGG-GC-GCGCCUUGUUUu------GUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 155994 0.67 0.957539
Target:  5'- -cAGCCCGCGUgcucgcggcgcggGGGAgGGGACGCcCGg -3'
miRNA:   3'- uaUCGGGCGCG-------------CCUUgUUUUGUGuGU- -5'
21501 5' -52.1 NC_004812.1 + 155849 0.78 0.485547
Target:  5'- -gGGCCCGCGgcgcCGGGagGCGAGGCGCGCGc -3'
miRNA:   3'- uaUCGGGCGC----GCCU--UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 155739 0.7 0.886444
Target:  5'- -gGGCgCGCGCGG-GCGGGGCuCGCGg -3'
miRNA:   3'- uaUCGgGCGCGCCuUGUUUUGuGUGU- -5'
21501 5' -52.1 NC_004812.1 + 155225 0.73 0.715146
Target:  5'- -gGGCgCgGCGCGGGGCGGGccgucGCGCACGg -3'
miRNA:   3'- uaUCG-GgCGCGCCUUGUUU-----UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 154977 0.77 0.50551
Target:  5'- -cGGgCCGCGCGGGACcc-GCGCGCAc -3'
miRNA:   3'- uaUCgGGCGCGCCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 154144 0.66 0.9743
Target:  5'- --cGCCgGCGCcccGGAcuuccgccgcgGCGAGGCGCACu -3'
miRNA:   3'- uauCGGgCGCG---CCU-----------UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 153638 0.66 0.981557
Target:  5'- -cGGCCCaugcgggcggGCG-GGGAgAGGGCGCGCAc -3'
miRNA:   3'- uaUCGGG----------CGCgCCUUgUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 153532 0.68 0.940526
Target:  5'- --cGCCCGCcUGGAcCGAcGCGCGCGg -3'
miRNA:   3'- uauCGGGCGcGCCUuGUUuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 152933 0.67 0.96516
Target:  5'- -gGGCgCCGgGCGGGACuuGGGCGC-CGg -3'
miRNA:   3'- uaUCG-GGCgCGCCUUGu-UUUGUGuGU- -5'
21501 5' -52.1 NC_004812.1 + 152897 0.67 0.96516
Target:  5'- -gAGCgCCGgGCGGGACuuGGGCGC-CGg -3'
miRNA:   3'- uaUCG-GGCgCGCCUUGu-UUUGUGuGU- -5'
21501 5' -52.1 NC_004812.1 + 152562 0.69 0.906765
Target:  5'- -cGGCCUGCgGCGGAgGCGGAGCggcgggcgGCGCGa -3'
miRNA:   3'- uaUCGGGCG-CGCCU-UGUUUUG--------UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.