Results 1 - 20 of 391 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 62634 | 1.06 | 0.008644 |
Target: 5'- uAUAGCCCGCGCGGAACAAAACACACAc -3' miRNA: 3'- -UAUCGGGCGCGCCUUGUUUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 136289 | 0.73 | 0.715146 |
Target: 5'- --cGCCCGCGUgGGGGCGGugccuGCGCGCGc -3' miRNA: 3'- uauCGGGCGCG-CCUUGUUu----UGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 143640 | 0.73 | 0.732613 |
Target: 5'- -cGGCCCcggGCGCGGAGCGcgcguucgacuucaAGACGCugGg -3' miRNA: 3'- uaUCGGG---CGCGCCUUGU--------------UUUGUGugU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 117724 | 0.66 | 0.983597 |
Target: 5'- -aAGgCCGUGCGGAgccucgacgACGucGCGCGCc -3' miRNA: 3'- uaUCgGGCGCGCCU---------UGUuuUGUGUGu -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 95406 | 0.77 | 0.50551 |
Target: 5'- -aAGCCCGCGCGcccGGCGAGugACGCGc -3' miRNA: 3'- uaUCGGGCGCGCc--UUGUUUugUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 115061 | 0.77 | 0.515623 |
Target: 5'- -cAGCCCGCGCcggcGGAGCucgcuGCGCACGu -3' miRNA: 3'- uaUCGGGCGCG----CCUUGuuu--UGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 2938 | 0.76 | 0.588337 |
Target: 5'- -aGGuCCCGCGUGGAGagcaGGAGCACGCc -3' miRNA: 3'- uaUC-GGGCGCGCCUUg---UUUUGUGUGu -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 11213 | 0.75 | 0.609529 |
Target: 5'- --cGCCCGCGCGcGccGGCAGGugACGCAg -3' miRNA: 3'- uauCGGGCGCGC-C--UUGUUUugUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 23624 | 0.74 | 0.673261 |
Target: 5'- --cGUCCGCGCGGccgcCGGGGCGCGCGg -3' miRNA: 3'- uauCGGGCGCGCCuu--GUUUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 155225 | 0.73 | 0.715146 |
Target: 5'- -gGGCgCgGCGCGGGGCGGGccgucGCGCACGg -3' miRNA: 3'- uaUCG-GgCGCGCCUUGUUU-----UGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 156183 | 0.74 | 0.694316 |
Target: 5'- -gGGCgCGCGCGaGAGCGccGCGCGCGg -3' miRNA: 3'- uaUCGgGCGCGC-CUUGUuuUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 81857 | 0.74 | 0.673261 |
Target: 5'- -gGGgCCGCGCGcGAGCAGcuGCGCGCGc -3' miRNA: 3'- uaUCgGGCGCGC-CUUGUUu-UGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 30631 | 0.79 | 0.409844 |
Target: 5'- -cGGgCCGCGCGGAcgcggggcGCGGGACGCGCGg -3' miRNA: 3'- uaUCgGGCGCGCCU--------UGUUUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 41206 | 0.74 | 0.694316 |
Target: 5'- --cGCgCCGCGCGGGGCGGcgacuACGCGCu -3' miRNA: 3'- uauCG-GGCGCGCCUUGUUu----UGUGUGu -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 30341 | 0.78 | 0.485547 |
Target: 5'- -gGGCCCGCGgcgcCGGGagGCGAGGCGCGCGc -3' miRNA: 3'- uaUCGGGCGC----GCCU--UGUUUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 86978 | 0.74 | 0.662675 |
Target: 5'- --cGCCCGCGggugcCGGAGCGgcggGGGCACGCAc -3' miRNA: 3'- uauCGGGCGC-----GCCUUGU----UUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 63230 | 0.74 | 0.704763 |
Target: 5'- -gGGCCCGuCGCGGu----GACGCACAu -3' miRNA: 3'- uaUCGGGC-GCGCCuuguuUUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 90018 | 0.73 | 0.725451 |
Target: 5'- -cGGCCCGCG-GGccGGCGAucGACGCGCAg -3' miRNA: 3'- uaUCGGGCGCgCC--UUGUU--UUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 29469 | 0.77 | 0.50551 |
Target: 5'- -cGGgCCGCGCGGGACcc-GCGCGCAc -3' miRNA: 3'- uaUCgGGCGCGCCUUGuuuUGUGUGU- -5' |
|||||||
21501 | 5' | -52.1 | NC_004812.1 | + | 105443 | 0.76 | 0.567283 |
Target: 5'- --cGCCCGagucgggaacgaCGCGGGGCGGGGCGCGCGc -3' miRNA: 3'- uauCGGGC------------GCGCCUUGUUUUGUGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home