miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 155378 0.69 0.937338
Target:  5'- cGCCGCCCGGGcggggaggAGCCCccgCggCGCc -3'
miRNA:   3'- cCGGUGGGCUCa-------UUGGGuaaGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 154845 0.67 0.977149
Target:  5'- cGGCCcCCCGAGgGACgCAUUa---GCa -3'
miRNA:   3'- -CCGGuGGGCUCaUUGgGUAAgaagCG- -5'
21511 3' -52.2 NC_004812.1 + 153913 0.71 0.890298
Target:  5'- cGGCCGCgucuUCGG---GCCCGgcgUCUUCGCg -3'
miRNA:   3'- -CCGGUG----GGCUcauUGGGUa--AGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 153788 0.7 0.921531
Target:  5'- uGGCCGgCCGAcgGGCCCGccg-UCGCg -3'
miRNA:   3'- -CCGGUgGGCUcaUUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 153610 0.66 0.984384
Target:  5'- cGGCCGCCUGGGccgGcaacuggaccggcccGCCCGacgUCUcggCGCu -3'
miRNA:   3'- -CCGGUGGGCUCa--U---------------UGGGUa--AGAa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 152006 0.72 0.819877
Target:  5'- gGGCCACCCGAGc--CCCGgg--UCGg -3'
miRNA:   3'- -CCGGUGGGCUCauuGGGUaagaAGCg -5'
21511 3' -52.2 NC_004812.1 + 151662 0.67 0.974615
Target:  5'- cGGCCGCCCGccGGccGCCCuccag-CGCc -3'
miRNA:   3'- -CCGGUGGGC--UCauUGGGuaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 151544 0.67 0.977149
Target:  5'- cGGCCcCCCGAGUcucccGCCCGggCcccCGUg -3'
miRNA:   3'- -CCGGuGGGCUCAu----UGGGUaaGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 150670 0.66 0.983638
Target:  5'- gGGCCcugcccccuguGCCCGGGggccuGCCCGgggUCUgccugcCGCc -3'
miRNA:   3'- -CCGG-----------UGGGCUCau---UGGGUa--AGAa-----GCG- -5'
21511 3' -52.2 NC_004812.1 + 148949 0.67 0.981653
Target:  5'- cGCUcccgGCCCGcg-GGCCCGcagCUUCGCg -3'
miRNA:   3'- cCGG----UGGGCucaUUGGGUaa-GAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 147974 0.66 0.983638
Target:  5'- uGGCCGCCCGcucc-CCCGccCcUCGCg -3'
miRNA:   3'- -CCGGUGGGCucauuGGGUaaGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 147510 0.74 0.755059
Target:  5'- cGGUgGcCCCGAGgcGCCg--UCUUCGCg -3'
miRNA:   3'- -CCGgU-GGGCUCauUGGguaAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 142962 0.67 0.971881
Target:  5'- cGGCCaaccuGCCCGGGUgGACgCGgcugUUUUCGUc -3'
miRNA:   3'- -CCGG-----UGGGCUCA-UUGgGUa---AGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 141988 0.66 0.987115
Target:  5'- aGGCCGCgCGGGUGcCCCGgc---UGCa -3'
miRNA:   3'- -CCGGUGgGCUCAUuGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 141827 0.68 0.96242
Target:  5'- cGGCCugCCuccGcGGCCCggUCUUCGa -3'
miRNA:   3'- -CCGGugGGcu-CaUUGGGuaAGAAGCg -5'
21511 3' -52.2 NC_004812.1 + 140515 0.7 0.921531
Target:  5'- cGGUCguGCCCGAGacuccaGGCCCGUUuccucccguggaCUUCGCc -3'
miRNA:   3'- -CCGG--UGGGCUCa-----UUGGGUAA------------GAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 140031 0.7 0.909764
Target:  5'- uGCCGCCCGcg-GGCCCGg---UCGCc -3'
miRNA:   3'- cCGGUGGGCucaUUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 139865 0.7 0.897025
Target:  5'- cGGCC-CCCGGGgcGCCCug-CgUCGa -3'
miRNA:   3'- -CCGGuGGGCUCauUGGGuaaGaAGCg -5'
21511 3' -52.2 NC_004812.1 + 138785 0.74 0.715356
Target:  5'- cGGCCGCCUGGGUcguggccgcgAACCCccUCUUUGa -3'
miRNA:   3'- -CCGGUGGGCUCA----------UUGGGuaAGAAGCg -5'
21511 3' -52.2 NC_004812.1 + 138394 0.78 0.52043
Target:  5'- cGCCGCCCGGGUGGCCUAcUac-CGCg -3'
miRNA:   3'- cCGGUGGGCUCAUUGGGUaAgaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.