miRNA display CGI


Results 1 - 20 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 50924 1.06 0.004696
Target:  5'- gAACGCCCGCGAAAACCCGGAACUCCGc -3'
miRNA:   3'- -UUGCGGGCGCUUUUGGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 67217 0.74 0.48669
Target:  5'- cGGCGCCCGCGGGcuCCCuccucucgagGGAGCcgCCGg -3'
miRNA:   3'- -UUGCGGGCGCUUuuGGG----------CCUUGa-GGC- -5'
21513 5' -56.3 NC_004812.1 + 2684 0.73 0.515483
Target:  5'- cGACGCgCGCGAAGACgCCGG-GC-CCGa -3'
miRNA:   3'- -UUGCGgGCGCUUUUG-GGCCuUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 89270 0.66 0.913583
Target:  5'- gGACGCgcaggCCGCGGcgcGGCgCGGAGCcCCGg -3'
miRNA:   3'- -UUGCG-----GGCGCUu--UUGgGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 74711 0.77 0.348385
Target:  5'- -uCGCCCuGCGGgugcuggccuGGGCCCGGGACUUCGg -3'
miRNA:   3'- uuGCGGG-CGCU----------UUUGGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 58530 0.77 0.356169
Target:  5'- -cCGCCCcCGAuAGCCCGGGgcccgGCUCCGg -3'
miRNA:   3'- uuGCGGGcGCUuUUGGGCCU-----UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 123919 0.76 0.364075
Target:  5'- uGGCGCCCGCGGu--CCCGGGccgGC-CCGg -3'
miRNA:   3'- -UUGCGGGCGCUuuuGGGCCU---UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 82381 0.76 0.405391
Target:  5'- --gGCgCGCGGAGACCCGGGGCcCCu -3'
miRNA:   3'- uugCGgGCGCUUUUGGGCCUUGaGGc -5'
21513 5' -56.3 NC_004812.1 + 31346 0.75 0.449537
Target:  5'- cGCGCCCGcCGcGAGCCCGGGcCgCCGg -3'
miRNA:   3'- uUGCGGGC-GCuUUUGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 31568 0.74 0.48008
Target:  5'- cGCGCCCgggcggcGCGAGGGgagcgcguccccgggUCCGGAGCUCCGu -3'
miRNA:   3'- uUGCGGG-------CGCUUUU---------------GGGCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 43219 0.74 0.458681
Target:  5'- cAGCGCCaGCGucucccagGAGACCCGGcgcuGCUCCGg -3'
miRNA:   3'- -UUGCGGgCGC--------UUUUGGGCCu---UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 124459 0.75 0.430667
Target:  5'- gGGCGCCCcgccgcgGCGggGGCCCGGccguGGCgUCCGg -3'
miRNA:   3'- -UUGCGGG-------CGCuuUUGGGCC----UUG-AGGC- -5'
21513 5' -56.3 NC_004812.1 + 84412 0.83 0.150063
Target:  5'- gGACGcCCCGCGAcGACCCGGGGCccCCGg -3'
miRNA:   3'- -UUGC-GGGCGCUuUUGGGCCUUGa-GGC- -5'
21513 5' -56.3 NC_004812.1 + 1022 0.74 0.458681
Target:  5'- cGCGCCCccGCGAGGGCCCGGccGC-CCGc -3'
miRNA:   3'- uUGCGGG--CGCUUUUGGGCCu-UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 61821 0.77 0.340723
Target:  5'- gGGCGCCCGCGugGGCCC---ACUCCGg -3'
miRNA:   3'- -UUGCGGGCGCuuUUGGGccuUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 74306 0.75 0.414001
Target:  5'- -uCGCCCGCGucauGGGCCCGGuGACgCCGa -3'
miRNA:   3'- uuGCGGGCGCu---UUUGGGCC-UUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 155900 0.74 0.477261
Target:  5'- cGCGCCgGCGccGACgccgaCGGAGCUCCGg -3'
miRNA:   3'- uUGCGGgCGCuuUUGg----GCCUUGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 123684 0.74 0.505805
Target:  5'- cGACGUCCgGCGcGAGCCCGGAcGC-CCGg -3'
miRNA:   3'- -UUGCGGG-CGCuUUUGGGCCU-UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 63521 0.77 0.348385
Target:  5'- aAGCGCCCGCu-GGGCCCG-AGCUCCa -3'
miRNA:   3'- -UUGCGGGCGcuUUUGGGCcUUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 65952 0.77 0.356169
Target:  5'- aGACGCCCGCGAcgaGGACCUGGcgcGCUCg- -3'
miRNA:   3'- -UUGCGGGCGCU---UUUGGGCCu--UGAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.