miRNA display CGI


Results 1 - 20 of 971 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 3' -63.1 NC_004812.1 + 48602 1.09 0.000854
Target:  5'- cGCGGCCGCGGCCAUCCGGACGACGCGc -3'
miRNA:   3'- -CGCCGGCGCCGGUAGGCCUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 82723 0.78 0.12255
Target:  5'- gGCGGCCGCGGCCGccgagcUguacgccgcccugaCCGcGACGACGCu -3'
miRNA:   3'- -CGCCGGCGCCGGU------A--------------GGC-CUGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 29893 0.78 0.126501
Target:  5'- gGgGGCCG-GGCCGggCCGGGCGugGUGg -3'
miRNA:   3'- -CgCCGGCgCCGGUa-GGCCUGCugCGC- -5'
21518 3' -63.1 NC_004812.1 + 13240 0.66 0.668194
Target:  5'- cGCGGUCGUcagcucguaccgggaGGCCuccgacGUCgGGGCGGCGg- -3'
miRNA:   3'- -CGCCGGCG---------------CCGG------UAGgCCUGCUGCgc -5'
21518 3' -63.1 NC_004812.1 + 148013 0.81 0.077104
Target:  5'- -aGG-CGCGGCC-UCCGGGCGGCGCGc -3'
miRNA:   3'- cgCCgGCGCCGGuAGGCCUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 40052 0.81 0.07906
Target:  5'- aGCGGCCGCcgcGGCCGcucgugcgcuuuUCCGGGCGGCGgGc -3'
miRNA:   3'- -CGCCGGCG---CCGGU------------AGGCCUGCUGCgC- -5'
21518 3' -63.1 NC_004812.1 + 27616 0.8 0.091832
Target:  5'- cGCGcCCGCGGCCcgCCGcgcuGACGGCGCGa -3'
miRNA:   3'- -CGCcGGCGCCGGuaGGC----CUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 39275 0.8 0.094143
Target:  5'- gGCGGCCGCcggGGCCcgggGUCCGGG-GGCGCGg -3'
miRNA:   3'- -CGCCGGCG---CCGG----UAGGCCUgCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 3809 0.8 0.10141
Target:  5'- gGCGGCCuCGGCgCcgCCGG-CGACGCGg -3'
miRNA:   3'- -CGCCGGcGCCG-GuaGGCCuGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 93836 0.79 0.117556
Target:  5'- -gGGCCGCGGCCAUCCGcucgcaGAgGuCGCGg -3'
miRNA:   3'- cgCCGGCGCCGGUAGGC------CUgCuGCGC- -5'
21518 3' -63.1 NC_004812.1 + 103240 0.79 0.111924
Target:  5'- cGCGaGCaggaGCGGCgG-CCGGGCGACGCGg -3'
miRNA:   3'- -CGC-CGg---CGCCGgUaGGCCUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 43842 0.8 0.10116
Target:  5'- cGCGGCuCGCGGCgccgaCGUCCGGGCGcggcggcgccgccGCGCGg -3'
miRNA:   3'- -CGCCG-GCGCCG-----GUAGGCCUGC-------------UGCGC- -5'
21518 3' -63.1 NC_004812.1 + 43571 0.9 0.018427
Target:  5'- cCGGCCGCGGCCGUCCGucCGGCGCGc -3'
miRNA:   3'- cGCCGGCGCCGGUAGGCcuGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 98224 0.79 0.111924
Target:  5'- gGCGGCCGCcuGGUCuccgCgGGGCGGCGCGg -3'
miRNA:   3'- -CGCCGGCG--CCGGua--GgCCUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 81509 0.84 0.052796
Target:  5'- gGCGGCCGCGGCCAagacgCUGGAgcaGGCGCGc -3'
miRNA:   3'- -CGCCGGCGCCGGUa----GGCCUg--CUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 4401 0.8 0.10066
Target:  5'- aGCGGCCgGCGGCCAuggcguagcccaggUgCGGcACGGCGCGg -3'
miRNA:   3'- -CGCCGG-CGCCGGU--------------AgGCC-UGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 43626 0.79 0.113866
Target:  5'- gGCGGCCGCGGCgccgcgauccaucgCcgCCGGACGuCGCc -3'
miRNA:   3'- -CGCCGGCGCCG--------------GuaGGCCUGCuGCGc -5'
21518 3' -63.1 NC_004812.1 + 80334 0.78 0.123451
Target:  5'- gGCGGCCGCGcgcGCCGU-CGaGGCGGCGCGc -3'
miRNA:   3'- -CGCCGGCGC---CGGUAgGC-CUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 2641 0.83 0.063041
Target:  5'- cGCGGCgGCGGCgCGUCCGGGuagaGGCGCGc -3'
miRNA:   3'- -CGCCGgCGCCG-GUAGGCCUg---CUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 88208 0.81 0.085219
Target:  5'- gGCGaGCCGCGGCC--CCGGACGGCGg- -3'
miRNA:   3'- -CGC-CGGCGCCGGuaGGCCUGCUGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.