miRNA display CGI


Results 1 - 20 of 427 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 97679 0.66 0.964485
Target:  5'- -cCAGGCGGcccccgccgagaccgGCuucgaggGGGACGUgGCGCGCg -3'
miRNA:   3'- cuGUCUGCU---------------UGua-----CCCUGCG-UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 10864 0.66 0.963143
Target:  5'- cGACcGACGAGCcccccgacccGcGGGCGCugGaCGCg -3'
miRNA:   3'- -CUGuCUGCUUGua--------C-CCUGCGugC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 29533 0.66 0.963143
Target:  5'- --gGGGgGGACccGGGcggcuCGCGCGCGUa -3'
miRNA:   3'- cugUCUgCUUGuaCCCu----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 153863 0.66 0.963143
Target:  5'- uGCAGAgCGGGCAgcUGuuGCGCAUGgGCa -3'
miRNA:   3'- cUGUCU-GCUUGU--ACccUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 26187 0.66 0.963143
Target:  5'- -cCGGGCG-ACG-GGGGCG-GCGCGUa -3'
miRNA:   3'- cuGUCUGCuUGUaCCCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 109450 0.66 0.963143
Target:  5'- cGAgGGAgaGGGCGgcgcgGGGGCGCcCGCGg -3'
miRNA:   3'- -CUgUCUg-CUUGUa----CCCUGCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 71777 0.66 0.963143
Target:  5'- cGACAGGCGGg---GGGGCGgGgGuCGCc -3'
miRNA:   3'- -CUGUCUGCUuguaCCCUGCgUgC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 74231 0.66 0.963143
Target:  5'- --aGGACGccuGCGagaaGGCGCACGCGCg -3'
miRNA:   3'- cugUCUGCu--UGUacc-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122962 0.66 0.963143
Target:  5'- uGCAGAgCGGGCAgcUGuuGCGCAUGgGCa -3'
miRNA:   3'- cUGUCU-GCUUGU--ACccUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 145606 0.66 0.963143
Target:  5'- gGGCgaAGGCGGACccGUGGucCGCcgggGCGCGCc -3'
miRNA:   3'- -CUG--UCUGCUUG--UACCcuGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 80882 0.66 0.963143
Target:  5'- -cCGGGUGGACAcGGaGcCGCugGCGCg -3'
miRNA:   3'- cuGUCUGCUUGUaCC-CuGCGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 141482 0.66 0.963143
Target:  5'- --gAGGCGAcGCGgccGGACGCGCGCu- -3'
miRNA:   3'- cugUCUGCU-UGUac-CCUGCGUGCGcg -5'
21519 3' -54.3 NC_004812.1 + 155041 0.66 0.963143
Target:  5'- --gGGGgGGACccGGGcggcuCGCGCGCGUa -3'
miRNA:   3'- cugUCUgCUUGuaCCCu----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 146964 0.66 0.963143
Target:  5'- -cCGGGCGGGgugggaGUGGG-CGCugGgGCg -3'
miRNA:   3'- cuGUCUGCUUg-----UACCCuGCGugCgCG- -5'
21519 3' -54.3 NC_004812.1 + 32688 0.66 0.963143
Target:  5'- -cCGGGCcGGCccGGGAcCGCGgGCGCc -3'
miRNA:   3'- cuGUCUGcUUGuaCCCU-GCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 124181 0.66 0.963143
Target:  5'- cGugGGGCG-GC-UGGG-CGCGgcCGCGCc -3'
miRNA:   3'- -CugUCUGCuUGuACCCuGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 94253 0.66 0.962801
Target:  5'- cGCcGACGcGCAUcuccggcGGGGCGUccucgucgaGCGCGCg -3'
miRNA:   3'- cUGuCUGCuUGUA-------CCCUGCG---------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 20583 0.66 0.959632
Target:  5'- -cCAGAcCGGACcgGccgguggcgaGGACGCGCGCcuGCg -3'
miRNA:   3'- cuGUCU-GCUUGuaC----------CCUGCGUGCG--CG- -5'
21519 3' -54.3 NC_004812.1 + 105654 0.66 0.959632
Target:  5'- aGGCuGGCGucCAgagGGGACGgGCGgcCGCg -3'
miRNA:   3'- -CUGuCUGCuuGUa--CCCUGCgUGC--GCG- -5'
21519 3' -54.3 NC_004812.1 + 29933 0.66 0.959632
Target:  5'- cGACGGcGCGAgggaGCggGGGGCcggGCuCGCGCc -3'
miRNA:   3'- -CUGUC-UGCU----UGuaCCCUG---CGuGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.