miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 156554 0.71 0.273131
Target:  5'- -cGCGUGGcGCCgCGccGCCgCGCCCGCg -3'
miRNA:   3'- ccCGCACCaCGG-GC--UGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 156525 0.71 0.244684
Target:  5'- gGGGcCG-GGaGCCCG-CCCgggaGCCCGCCc -3'
miRNA:   3'- -CCC-GCaCCaCGGGCuGGGg---CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 156501 0.77 0.105489
Target:  5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 156091 0.75 0.137402
Target:  5'- cGGGCGcgcGG-GCCCG-CCCCGgCCGCg -3'
miRNA:   3'- -CCCGCa--CCaCGGGCuGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 155966 0.66 0.480083
Target:  5'- cGGCGuUGGUGggcgcaCUCGAUCCCGgCUGUCc -3'
miRNA:   3'- cCCGC-ACCAC------GGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155895 0.68 0.397179
Target:  5'- gGGGCG-GG-GCCgGcGCCCgGgCUGCCg -3'
miRNA:   3'- -CCCGCaCCaCGGgC-UGGGgCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155789 0.67 0.429252
Target:  5'- cGGGCGUcGGacaCCGcuuCCCgGCCgGCCg -3'
miRNA:   3'- -CCCGCA-CCacgGGCu--GGGgCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 155585 0.67 0.462801
Target:  5'- cGGGCGgccGG-GCCCucgcgggggcgcGGCCCCGgCCGg- -3'
miRNA:   3'- -CCCGCa--CCaCGGG------------CUGGGGCgGGCgg -5'
21519 5' -66.1 NC_004812.1 + 155492 0.66 0.51555
Target:  5'- -uGCGaUGG-GCCCcggcgaagcGACCCgGgCCGCCg -3'
miRNA:   3'- ccCGC-ACCaCGGG---------CUGGGgCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155453 0.66 0.506579
Target:  5'- gGGaGCGgGG-GgCCGGgCUCGCgCCGCCg -3'
miRNA:   3'- -CC-CGCaCCaCgGGCUgGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155385 0.7 0.317323
Target:  5'- cGGGCGgggaGGaGCCCccgcGGCgCCGCCCccgGCCg -3'
miRNA:   3'- -CCCGCa---CCaCGGG----CUGgGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 155296 0.72 0.220728
Target:  5'- gGGGCGcGGcgggGCCCGggggucggcGCCCCGCCUccggggacccuggggGCCg -3'
miRNA:   3'- -CCCGCaCCa---CGGGC---------UGGGGCGGG---------------CGG- -5'
21519 5' -66.1 NC_004812.1 + 155157 0.72 0.213844
Target:  5'- cGGCGUcgccgccGUGCCCGGCCCUcgcgGCCCcgGCCc -3'
miRNA:   3'- cCCGCAc------CACGGGCUGGGG----CGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 155113 0.73 0.199713
Target:  5'- cGGCGcGGgccgGCCgGcgcuccGCCgCCGCCCGCCg -3'
miRNA:   3'- cCCGCaCCa---CGGgC------UGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 154729 0.66 0.506579
Target:  5'- cGGGCG-GG-GCCCGGg--CGCCCggGCCa -3'
miRNA:   3'- -CCCGCaCCaCGGGCUgggGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 154600 0.67 0.429252
Target:  5'- cGGCGUcGGcGCCCcgagcGACCgCCGgcgggaCCCGCCc -3'
miRNA:   3'- cCCGCA-CCaCGGG-----CUGG-GGC------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 154452 0.7 0.279129
Target:  5'- uGGagGUGGccgccGCCgCGAgCCCCGCCCGCg -3'
miRNA:   3'- cCCg-CACCa----CGG-GCU-GGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 154259 0.68 0.413024
Target:  5'- -cGCGccGG-GCCCGACgCCCugccGCCCGCg -3'
miRNA:   3'- ccCGCa-CCaCGGGCUG-GGG----CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 153500 0.77 0.104724
Target:  5'- cGGCGaGGaGCUCGgcggcgccucccccGCCCCGCCCGCCu -3'
miRNA:   3'- cCCGCaCCaCGGGC--------------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 153112 0.7 0.297751
Target:  5'- cGGCcccGG-GCCCGcGCCCgCgGCCCGCCg -3'
miRNA:   3'- cCCGca-CCaCGGGC-UGGG-G-CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.