Results 1 - 20 of 686 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 5' | -66.1 | NC_004812.1 | + | 48321 | 1.12 | 0.000298 |
Target: 5'- cGGGCGUGGUGCCCGACCCCGCCCGCCu -3' miRNA: 3'- -CCCGCACCACGGGCUGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 56441 | 0.76 | 0.113428 |
Target: 5'- cGGGCGgcGG-GCCUGgcggcgcgaugaGCCCCGcCCCGCCg -3' miRNA: 3'- -CCCGCa-CCaCGGGC------------UGGGGC-GGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 77266 | 0.76 | 0.121922 |
Target: 5'- gGGGCGccgcUGGcgcUGCCCGcCCCCGCCCcauCCg -3' miRNA: 3'- -CCCGC----ACC---ACGGGCuGGGGCGGGc--GG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 126296 | 0.66 | 0.528216 |
Target: 5'- gGGGCcguuccUGGUGCCCgcggagguccccaggGACCCCucggcgugcugcGCCCuggGCCc -3' miRNA: 3'- -CCCGc-----ACCACGGG---------------CUGGGG------------CGGG---CGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 18565 | 0.8 | 0.067851 |
Target: 5'- cGGGagcCGUGGUGCCCG-CCCgCGUUCGCCc -3' miRNA: 3'- -CCC---GCACCACGGGCuGGG-GCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 44343 | 0.78 | 0.084699 |
Target: 5'- uGGGCGggcUGGUGgcCCCGcccaccaaccacGCCCCGUCCGCCc -3' miRNA: 3'- -CCCGC---ACCAC--GGGC------------UGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 32781 | 0.78 | 0.088953 |
Target: 5'- uGGCccgGGcGCCCgGGCCCCGCCCGCg -3' miRNA: 3'- cCCGca-CCaCGGG-CUGGGGCGGGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 59282 | 0.78 | 0.093408 |
Target: 5'- aGGGuCGcgGGcGCgCGGCaCCCGCCCGCCg -3' miRNA: 3'- -CCC-GCa-CCaCGgGCUG-GGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 91 | 0.77 | 0.105489 |
Target: 5'- cGGGCG-GGcuCCCGGCCCCGCgCGCg -3' miRNA: 3'- -CCCGCaCCacGGGCUGGGGCGgGCGg -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 96734 | 0.76 | 0.113428 |
Target: 5'- aGGGCc-GG-GCCgCGGCCCCGCUCGUCg -3' miRNA: 3'- -CCCGcaCCaCGG-GCUGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 105958 | 0.77 | 0.108075 |
Target: 5'- cGGGCGgcgaGUcGCCgGGCCCCGCCCcCCa -3' miRNA: 3'- -CCCGCac--CA-CGGgCUGGGGCGGGcGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 27991 | 0.77 | 0.104724 |
Target: 5'- cGGCGaGGaGCUCGgcggcgccucccccGCCCCGCCCGCCu -3' miRNA: 3'- cCCGCaCCaCGGGC--------------UGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 50145 | 0.85 | 0.029695 |
Target: 5'- -cGCGUGGggggcGCCCGGCUCCGUCCGCCg -3' miRNA: 3'- ccCGCACCa----CGGGCUGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 57922 | 0.77 | 0.108075 |
Target: 5'- cGGCGcGGcgGUUCGACCgCGCCCGCCc -3' miRNA: 3'- cCCGCaCCa-CGGGCUGGgGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 83402 | 0.84 | 0.034547 |
Target: 5'- aGGGCGgccgcgaGGacGuCCCGGCCCCGCCCGCCc -3' miRNA: 3'- -CCCGCa------CCa-C-GGGCUGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 33107 | 0.77 | 0.098075 |
Target: 5'- cGGCcuUGGaGcCCCGGCCCgGCCCGCCg -3' miRNA: 3'- cCCGc-ACCaC-GGGCUGGGgCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 33854 | 0.76 | 0.113428 |
Target: 5'- cGGGCGcaccGUGCgCGcccucuCCCCGCCCGCCc -3' miRNA: 3'- -CCCGCac--CACGgGCu-----GGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 101970 | 0.76 | 0.115081 |
Target: 5'- cGGCGacccccgUGGUGagcccgcgggccucUCCGGCCCCGCCCGUCc -3' miRNA: 3'- cCCGC-------ACCAC--------------GGGCUGGGGCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 105420 | 0.8 | 0.066191 |
Target: 5'- cGGCG-GG-GCCCGgcGCCCgCGCCCGCCc -3' miRNA: 3'- cCCGCaCCaCGGGC--UGGG-GCGGGCGG- -5' |
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21519 | 5' | -66.1 | NC_004812.1 | + | 54642 | 0.78 | 0.084699 |
Target: 5'- cGGGCGgcgGGcGUCCGcgGCCCCugacGCCCGCCg -3' miRNA: 3'- -CCCGCa--CCaCGGGC--UGGGG----CGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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