miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 155099 0.71 0.735178
Target:  5'- cCGGGGaCGGCCccgUGAAUAauucacgacgguuggCUCCGCGg -3'
miRNA:   3'- -GCCCCaGCCGGa--GCUUAUa--------------GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 154799 0.66 0.933276
Target:  5'- aCGGGG-CGGCCcCGAc-GUCcgCCAUGc -3'
miRNA:   3'- -GCCCCaGCCGGaGCUuaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 154412 0.66 0.928196
Target:  5'- cCGGGGcuccaaGGCCgCGAGagggCUCCAUGg -3'
miRNA:   3'- -GCCCCag----CCGGaGCUUaua-GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 152713 0.69 0.816737
Target:  5'- gCGGGGgCGGCCUCGGAgg-CggaggCCGgGc -3'
miRNA:   3'- -GCCCCaGCCGGAGCUUauaGa----GGUgC- -5'
21524 3' -55.7 NC_004812.1 + 151728 0.68 0.849529
Target:  5'- cCGGGaGUgaGGCCUCGuuguuUCUCgCGCGg -3'
miRNA:   3'- -GCCC-CAg-CCGGAGCuuau-AGAG-GUGC- -5'
21524 3' -55.7 NC_004812.1 + 151592 0.66 0.922882
Target:  5'- cCGGGGucgUCGGCCUCGGA---CUCgGa- -3'
miRNA:   3'- -GCCCC---AGCCGGAGCUUauaGAGgUgc -5'
21524 3' -55.7 NC_004812.1 + 147503 0.7 0.743844
Target:  5'- gGGGGUCcgguGGCCcCGAGgcgccGUCUUCGCGc -3'
miRNA:   3'- gCCCCAG----CCGGaGCUUa----UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 141769 0.67 0.886157
Target:  5'- gCGGGG-CGGCgUCGAAcgg--CCGCGc -3'
miRNA:   3'- -GCCCCaGCCGgAGCUUauagaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 135080 0.66 0.938124
Target:  5'- gCGGGGgc-GCgCUCGGAgcccGUCUUCACGc -3'
miRNA:   3'- -GCCCCagcCG-GAGCUUa---UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 129022 0.66 0.922882
Target:  5'- cCGGGGccggCGGCCcCGGGgg-CggggCCGCGg -3'
miRNA:   3'- -GCCCCa---GCCGGaGCUUauaGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 124198 0.71 0.735178
Target:  5'- cCGGGGaCGGCCccgUGAAUAauucacgacgguuggCUCCGCGg -3'
miRNA:   3'- -GCCCCaGCCGGa--GCUUAUa--------------GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 123898 0.66 0.933276
Target:  5'- aCGGGG-CGGCCcCGAc-GUCcgCCAUGc -3'
miRNA:   3'- -GCCCCaGCCGGaGCUuaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 123511 0.66 0.928196
Target:  5'- cCGGGGcuccaaGGCCgCGAGagggCUCCAUGg -3'
miRNA:   3'- -GCCCCag----CCGGaGCUUaua-GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 121812 0.69 0.816737
Target:  5'- gCGGGGgCGGCCUCGGAgg-CggaggCCGgGc -3'
miRNA:   3'- -GCCCCaGCCGGAGCUUauaGa----GGUgC- -5'
21524 3' -55.7 NC_004812.1 + 120827 0.68 0.849529
Target:  5'- cCGGGaGUgaGGCCUCGuuguuUCUCgCGCGg -3'
miRNA:   3'- -GCCC-CAg-CCGGAGCuuau-AGAG-GUGC- -5'
21524 3' -55.7 NC_004812.1 + 115543 0.66 0.928196
Target:  5'- aGGGGg-GGCCUCGAGagaCUCCcCu -3'
miRNA:   3'- gCCCCagCCGGAGCUUauaGAGGuGc -5'
21524 3' -55.7 NC_004812.1 + 109669 0.67 0.886157
Target:  5'- gCGGGacgcgcggcuGUCGGCggCGGAUGUgUCCGCc -3'
miRNA:   3'- -GCCC----------CAGCCGgaGCUUAUAgAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 108919 0.69 0.808112
Target:  5'- cCGGGGgcccgCGGCCgCGggUuuccccCUCUACGu -3'
miRNA:   3'- -GCCCCa----GCCGGaGCuuAua----GAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 108560 0.66 0.922882
Target:  5'- gGGGGUgaugaaGGCC-CGGGcGUCggCCACGa -3'
miRNA:   3'- gCCCCAg-----CCGGaGCUUaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 108306 0.66 0.935243
Target:  5'- gCGGcGUCGGCCUCcucggccaccgccgcGGccGUCUCCAgGg -3'
miRNA:   3'- -GCCcCAGCCGGAG---------------CUuaUAGAGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.