miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 3' -58.5 NC_004812.1 + 58684 0.66 0.810707
Target:  5'- gGCUGGCUggaGCccGGGggCUUGCCGu -3'
miRNA:   3'- aCGACCGGa--UGcuCCCuaGAGCGGUg -5'
21531 3' -58.5 NC_004812.1 + 121219 0.66 0.810707
Target:  5'- cGCUGGCCgACGuGGcccacgaGUCcuUUGCCACg -3'
miRNA:   3'- aCGACCGGaUGCuCCc------UAG--AGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 107158 0.66 0.810707
Target:  5'- aGCUGGUC-GCGAGuGGUCUcuugCGCCGg -3'
miRNA:   3'- aCGACCGGaUGCUCcCUAGA----GCGGUg -5'
21531 3' -58.5 NC_004812.1 + 137853 0.66 0.810707
Target:  5'- cGCUGGCgacggACGAGGug---CGCCGCg -3'
miRNA:   3'- aCGACCGga---UGCUCCcuagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 110951 0.66 0.810707
Target:  5'- gUGCUGGauCCU-CGcGGGA-CUCGCUAUc -3'
miRNA:   3'- -ACGACC--GGAuGCuCCCUaGAGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 90438 0.66 0.810707
Target:  5'- cUGCUGGCC-----GGGGUgCUCGCC-Ca -3'
miRNA:   3'- -ACGACCGGaugcuCCCUA-GAGCGGuG- -5'
21531 3' -58.5 NC_004812.1 + 137766 0.66 0.804591
Target:  5'- cGCUgGGCCgaggcgcGCGAcgguggcGGGAUCUggcgggcggcgagggCGCCGCg -3'
miRNA:   3'- aCGA-CCGGa------UGCU-------CCCUAGA---------------GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 22908 0.66 0.801947
Target:  5'- gGCgcguGCCUGCGGGGGcggagcgugggGUCgcggugagucccUCGCCGCu -3'
miRNA:   3'- aCGac--CGGAUGCUCCC-----------UAG------------AGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 152634 0.66 0.801947
Target:  5'- gUGCccgGGCCggcgcgcgGCGGGGGGg--CGCCGg -3'
miRNA:   3'- -ACGa--CCGGa-------UGCUCCCUagaGCGGUg -5'
21531 3' -58.5 NC_004812.1 + 75842 0.66 0.799289
Target:  5'- gUGCUGGUCU-CGGGGGuguagggguugaacgCgaaCGCCGCc -3'
miRNA:   3'- -ACGACCGGAuGCUCCCua-------------Ga--GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 137548 0.66 0.793035
Target:  5'- cGCgGGCCUGgGccGcGGUCUCgGCCGCc -3'
miRNA:   3'- aCGaCCGGAUgCucC-CUAGAG-CGGUG- -5'
21531 3' -58.5 NC_004812.1 + 48347 0.66 0.793035
Target:  5'- gGCggacGCCgcCGAGGGcUC-CGCCGCg -3'
miRNA:   3'- aCGac--CGGauGCUCCCuAGaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 23845 0.66 0.783982
Target:  5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3'
miRNA:   3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 149556 0.66 0.783982
Target:  5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3'
miRNA:   3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 149353 0.66 0.783982
Target:  5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3'
miRNA:   3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 61706 0.66 0.783982
Target:  5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3'
miRNA:   3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 13284 0.66 0.783982
Target:  5'- cGgaGGCCUcggcGCGGcGGGGcguccgcgUCUCcGCCGCg -3'
miRNA:   3'- aCgaCCGGA----UGCU-CCCU--------AGAG-CGGUG- -5'
21531 3' -58.5 NC_004812.1 + 24487 0.66 0.783982
Target:  5'- gGC-GGCCgcuccuggACGGGGGGcCcccgCGCCGCg -3'
miRNA:   3'- aCGaCCGGa-------UGCUCCCUaGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 94344 0.66 0.783982
Target:  5'- cGC-GGCCUGCGcGGGGcgggcggcGUUggagCGCCGCc -3'
miRNA:   3'- aCGaCCGGAUGC-UCCC--------UAGa---GCGGUG- -5'
21531 3' -58.5 NC_004812.1 + 24047 0.66 0.783982
Target:  5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3'
miRNA:   3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.