Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21531 | 3' | -58.5 | NC_004812.1 | + | 58684 | 0.66 | 0.810707 |
Target: 5'- gGCUGGCUggaGCccGGGggCUUGCCGu -3' miRNA: 3'- aCGACCGGa--UGcuCCCuaGAGCGGUg -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 121219 | 0.66 | 0.810707 |
Target: 5'- cGCUGGCCgACGuGGcccacgaGUCcuUUGCCACg -3' miRNA: 3'- aCGACCGGaUGCuCCc------UAG--AGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 107158 | 0.66 | 0.810707 |
Target: 5'- aGCUGGUC-GCGAGuGGUCUcuugCGCCGg -3' miRNA: 3'- aCGACCGGaUGCUCcCUAGA----GCGGUg -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 137853 | 0.66 | 0.810707 |
Target: 5'- cGCUGGCgacggACGAGGug---CGCCGCg -3' miRNA: 3'- aCGACCGga---UGCUCCcuagaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 110951 | 0.66 | 0.810707 |
Target: 5'- gUGCUGGauCCU-CGcGGGA-CUCGCUAUc -3' miRNA: 3'- -ACGACC--GGAuGCuCCCUaGAGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 90438 | 0.66 | 0.810707 |
Target: 5'- cUGCUGGCC-----GGGGUgCUCGCC-Ca -3' miRNA: 3'- -ACGACCGGaugcuCCCUA-GAGCGGuG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 137766 | 0.66 | 0.804591 |
Target: 5'- cGCUgGGCCgaggcgcGCGAcgguggcGGGAUCUggcgggcggcgagggCGCCGCg -3' miRNA: 3'- aCGA-CCGGa------UGCU-------CCCUAGA---------------GCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 22908 | 0.66 | 0.801947 |
Target: 5'- gGCgcguGCCUGCGGGGGcggagcgugggGUCgcggugagucccUCGCCGCu -3' miRNA: 3'- aCGac--CGGAUGCUCCC-----------UAG------------AGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 152634 | 0.66 | 0.801947 |
Target: 5'- gUGCccgGGCCggcgcgcgGCGGGGGGg--CGCCGg -3' miRNA: 3'- -ACGa--CCGGa-------UGCUCCCUagaGCGGUg -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 75842 | 0.66 | 0.799289 |
Target: 5'- gUGCUGGUCU-CGGGGGuguagggguugaacgCgaaCGCCGCc -3' miRNA: 3'- -ACGACCGGAuGCUCCCua-------------Ga--GCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 137548 | 0.66 | 0.793035 |
Target: 5'- cGCgGGCCUGgGccGcGGUCUCgGCCGCc -3' miRNA: 3'- aCGaCCGGAUgCucC-CUAGAG-CGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 48347 | 0.66 | 0.793035 |
Target: 5'- gGCggacGCCgcCGAGGGcUC-CGCCGCg -3' miRNA: 3'- aCGac--CGGauGCUCCCuAGaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 23845 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 149556 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 149353 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 61706 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 13284 | 0.66 | 0.783982 |
Target: 5'- cGgaGGCCUcggcGCGGcGGGGcguccgcgUCUCcGCCGCg -3' miRNA: 3'- aCgaCCGGA----UGCU-CCCU--------AGAG-CGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 24487 | 0.66 | 0.783982 |
Target: 5'- gGC-GGCCgcuccuggACGGGGGGcCcccgCGCCGCg -3' miRNA: 3'- aCGaCCGGa-------UGCUCCCUaGa---GCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 94344 | 0.66 | 0.783982 |
Target: 5'- cGC-GGCCUGCGcGGGGcgggcggcGUUggagCGCCGCc -3' miRNA: 3'- aCGaCCGGAUGC-UCCC--------UAGa---GCGGUG- -5' |
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21531 | 3' | -58.5 | NC_004812.1 | + | 24047 | 0.66 | 0.783982 |
Target: 5'- uUGCUaGGCg-ACGGGGGA---CGCCGCc -3' miRNA: 3'- -ACGA-CCGgaUGCUCCCUagaGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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