miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 156508 0.73 0.446485
Target:  5'- cGG-GCCGGGG-CGCGCGcGGG-GCCGg -3'
miRNA:   3'- -CCaCGGCCCCuGUGUGCuUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156458 0.67 0.824161
Target:  5'- cGG-GCCGcGGGCGCgGCGGcgcGGCGCCa -3'
miRNA:   3'- -CCaCGGCcCCUGUG-UGCUu--CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 156393 0.67 0.815843
Target:  5'- cGGggGCCGGGGcUGCGCGAcccGGGC-CCu -3'
miRNA:   3'- -CCa-CGGCCCCuGUGUGCU---UCUGcGGc -5'
21547 3' -58.3 NC_004812.1 + 156313 0.66 0.848103
Target:  5'- aGGgagGgCGGGGG-ACGgGAGGGgGCCGa -3'
miRNA:   3'- -CCa--CgGCCCCUgUGUgCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156233 0.7 0.657024
Target:  5'- gGGcGCCGcGGGAUGCGcCGgcGGCgGCCGa -3'
miRNA:   3'- -CCaCGGC-CCCUGUGU-GCuuCUG-CGGC- -5'
21547 3' -58.3 NC_004812.1 + 156179 0.68 0.744319
Target:  5'- --cGgCGGGcGCGCGCGAGaGCGCCGc -3'
miRNA:   3'- ccaCgGCCCcUGUGUGCUUcUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 156139 0.66 0.832314
Target:  5'- cGG-GCCGcGcGGACGCGgGGcgcgGGACGCgCGg -3'
miRNA:   3'- -CCaCGGC-C-CCUGUGUgCU----UCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 156030 0.71 0.59662
Target:  5'- cGGgGCCGGGGGCcgcgcCGCGGgacgggcGGGCGUCGc -3'
miRNA:   3'- -CCaCGGCCCCUGu----GUGCU-------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155928 0.69 0.676758
Target:  5'- cGGacCCGGGGACGCGCuccccucGCGCCGc -3'
miRNA:   3'- -CCacGGCCCCUGUGUGcuuc---UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155899 0.67 0.815843
Target:  5'- cGGgGCCGGcgcccGGGCugccGCGcCGAGGAgGCCGg -3'
miRNA:   3'- -CCaCGGCC-----CCUG----UGU-GCUUCUgCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155890 0.7 0.647124
Target:  5'- --cGCCGGcGAC-CGCGccGGCGCCGa -3'
miRNA:   3'- ccaCGGCCcCUGuGUGCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155811 0.68 0.725351
Target:  5'- --gGCCGGGcGGCG-GCGggGGCGgCGg -3'
miRNA:   3'- ccaCGGCCC-CUGUgUGCuuCUGCgGC- -5'
21547 3' -58.3 NC_004812.1 + 155762 0.69 0.696355
Target:  5'- --gGCCgcGGGGACACGCGcggggcccuccGGGCGUCGg -3'
miRNA:   3'- ccaCGG--CCCCUGUGUGCu----------UCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 155728 0.68 0.772059
Target:  5'- uGGgggGUgGGGGGCGCGCGcGGGCGg-- -3'
miRNA:   3'- -CCa--CGgCCCCUGUGUGCuUCUGCggc -5'
21547 3' -58.3 NC_004812.1 + 155686 0.71 0.576938
Target:  5'- --cGCCGGcGGGCucggcgcGCGCGAGGGCGUgGg -3'
miRNA:   3'- ccaCGGCC-CCUG-------UGUGCUUCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 155585 0.69 0.71575
Target:  5'- cGGgcgGCCGGGcccuCGCGggGGCGCgGc -3'
miRNA:   3'- -CCa--CGGCCCcuguGUGCuuCUGCGgC- -5'
21547 3' -58.3 NC_004812.1 + 155253 0.74 0.403636
Target:  5'- cGG-GCCgaGGGGGgGCGCGGcGGACGCCa -3'
miRNA:   3'- -CCaCGG--CCCCUgUGUGCU-UCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 155118 0.69 0.69733
Target:  5'- cGG-GCCGGccGGCGCuccgccgccgcccgcCGAGGACGCCGg -3'
miRNA:   3'- -CCaCGGCCc-CUGUGu--------------GCUUCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 154856 0.72 0.519908
Target:  5'- cGGcUGCgaGGGGGCGCgggcucgggccGCGGAGGCGCgCGg -3'
miRNA:   3'- -CC-ACGg-CCCCUGUG-----------UGCUUCUGCG-GC- -5'
21547 3' -58.3 NC_004812.1 + 154721 0.66 0.863156
Target:  5'- gGGUGCCGcGGGCGgGgCccGGGCGCCc -3'
miRNA:   3'- -CCACGGCcCCUGUgU-GcuUCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.