miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 54763 0.66 0.928294
Target:  5'- gCgGUGGACacggcggcgcUCGUGGCCGaccuaGCgggGGCGc -3'
miRNA:   3'- -GgUACUUGa---------AGCACCGGCg----CGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 88169 0.66 0.928294
Target:  5'- aCAUGAGCgaccccggggCGUcccuccucucGGCCGCGg-GGCGa -3'
miRNA:   3'- gGUACUUGaa--------GCA----------CCGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 22907 0.66 0.928294
Target:  5'- -gGUGcGCgggggCGUGGCCGCGCccccGCGc -3'
miRNA:   3'- ggUACuUGaa---GCACCGGCGCGac--CGC- -5'
21551 3' -56 NC_004812.1 + 58628 0.66 0.928294
Target:  5'- ---gGAGCUUCGcggggaacUGGuuGCGCUGcaGCGc -3'
miRNA:   3'- gguaCUUGAAGC--------ACCggCGCGAC--CGC- -5'
21551 3' -56 NC_004812.1 + 75225 0.66 0.928294
Target:  5'- gCCGUGAcGCggUCgGUGGCCucgGCGCgcugcugcuUGGCGc -3'
miRNA:   3'- -GGUACU-UGa-AG-CACCGG---CGCG---------ACCGC- -5'
21551 3' -56 NC_004812.1 + 94306 0.66 0.928294
Target:  5'- -gGUGcGCUUgGUcgccGGCUGCGC-GGCGg -3'
miRNA:   3'- ggUACuUGAAgCA----CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 39383 0.66 0.928294
Target:  5'- gCCAgcuGCUgaaUGGcCCGCaGCUGGCGg -3'
miRNA:   3'- -GGUacuUGAagcACC-GGCG-CGACCGC- -5'
21551 3' -56 NC_004812.1 + 78456 0.66 0.928294
Target:  5'- cCCGuccUGGACgagggguccaUCGUGgggcGCCugGCGCUGGCGa -3'
miRNA:   3'- -GGU---ACUUGa---------AGCAC----CGG--CGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 142461 0.66 0.927771
Target:  5'- aCCAUGgGGCUgggCGagGGCgcccugaCGCgGCUGGCGg -3'
miRNA:   3'- -GGUAC-UUGAa--GCa-CCG-------GCG-CGACCGC- -5'
21551 3' -56 NC_004812.1 + 70861 0.66 0.922962
Target:  5'- gCAUGAuccccaGCUcCGcgaaGGCCGCGUaGGCGc -3'
miRNA:   3'- gGUACU------UGAaGCa---CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 94116 0.66 0.917395
Target:  5'- uCCGgcGGGCg-CGUGGuCCGCGCcGGCc -3'
miRNA:   3'- -GGUa-CUUGaaGCACC-GGCGCGaCCGc -5'
21551 3' -56 NC_004812.1 + 103745 0.66 0.917395
Target:  5'- cCCGUGGGCgcggaugUCuauggGGCCGCGgucgGGCGu -3'
miRNA:   3'- -GGUACUUGa------AGca---CCGGCGCga--CCGC- -5'
21551 3' -56 NC_004812.1 + 83285 0.66 0.917395
Target:  5'- ---cGAGCgcggCGcUGGCCGCGCU-GUGg -3'
miRNA:   3'- gguaCUUGaa--GC-ACCGGCGCGAcCGC- -5'
21551 3' -56 NC_004812.1 + 156027 0.66 0.911593
Target:  5'- gCCcgGGGC--CGggGGCCGCGCcgcgggacgGGCGg -3'
miRNA:   3'- -GGuaCUUGaaGCa-CCGGCGCGa--------CCGC- -5'
21551 3' -56 NC_004812.1 + 30519 0.66 0.911593
Target:  5'- gCCcgGGGC--CGggGGCCGCGCcgcgggacgGGCGg -3'
miRNA:   3'- -GGuaCUUGaaGCa-CCGGCGCGa--------CCGC- -5'
21551 3' -56 NC_004812.1 + 139962 0.66 0.911593
Target:  5'- gCCggGAGCgcgcggCGUGGCgGaCGUcGGCGa -3'
miRNA:   3'- -GGuaCUUGaa----GCACCGgC-GCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 12810 0.66 0.911593
Target:  5'- ---cGAACUgcgCGUggacGGCCGCGgUGGUc -3'
miRNA:   3'- gguaCUUGAa--GCA----CCGGCGCgACCGc -5'
21551 3' -56 NC_004812.1 + 5997 0.66 0.899294
Target:  5'- cCCcgGAACgcgCGUcGG-CGCGC-GGCGg -3'
miRNA:   3'- -GGuaCUUGaa-GCA-CCgGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 128148 0.66 0.899294
Target:  5'- -gAUGGACcgCGgaccgGGUCGCGC-GGCGc -3'
miRNA:   3'- ggUACUUGaaGCa----CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 36144 0.66 0.899294
Target:  5'- cCCAcGggUUggcCGUGGCgGCGCaggGGUGc -3'
miRNA:   3'- -GGUaCuuGAa--GCACCGgCGCGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.