miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 33718 1.1 0.003735
Target:  5'- cGUACAGCACCAUCCCCGUGGUCAACGa -3'
miRNA:   3'- -CAUGUCGUGGUAGGGGCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 139896 0.68 0.879927
Target:  5'- -aGCGGgACCggCCCCGcGGUCGcucGCGc -3'
miRNA:   3'- caUGUCgUGGuaGGGGCaCCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 111341 0.68 0.886953
Target:  5'- -gGCGGCGCCGaCCCCGcGGgcccccCAGCu -3'
miRNA:   3'- caUGUCGUGGUaGGGGCaCCa-----GUUGc -5'
21558 3' -54.5 NC_004812.1 + 103616 0.66 0.956681
Target:  5'- cGUGCuacaGCCG-CCCCcUGGUCAGCu -3'
miRNA:   3'- -CAUGucg-UGGUaGGGGcACCAGUUGc -5'
21558 3' -54.5 NC_004812.1 + 111667 0.7 0.789213
Target:  5'- -cGCucguGUACCGcUCCCCGUcGUCGGCGa -3'
miRNA:   3'- caUGu---CGUGGU-AGGGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 68545 0.7 0.789213
Target:  5'- cGUACAGCGuuucaaacuCC-UCCCCGUGGa-AGCGg -3'
miRNA:   3'- -CAUGUCGU---------GGuAGGGGCACCagUUGC- -5'
21558 3' -54.5 NC_004812.1 + 5334 0.69 0.83326
Target:  5'- -cGgGGCGCCG-CCCgG-GGUCGGCGg -3'
miRNA:   3'- caUgUCGUGGUaGGGgCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 101965 0.69 0.83326
Target:  5'- -cGCGGCGgCGacCCCCGUGGUgAGCc -3'
miRNA:   3'- caUGUCGUgGUa-GGGGCACCAgUUGc -5'
21558 3' -54.5 NC_004812.1 + 58212 0.69 0.849634
Target:  5'- cUGCGGCGCCG-CCCCGcGGcCGccGCGc -3'
miRNA:   3'- cAUGUCGUGGUaGGGGCaCCaGU--UGC- -5'
21558 3' -54.5 NC_004812.1 + 46886 0.68 0.879927
Target:  5'- -cGCAGCcCCAgcgCCCCGgggcgGGcgCGGCGg -3'
miRNA:   3'- caUGUCGuGGUa--GGGGCa----CCa-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 132774 0.69 0.857524
Target:  5'- -gGCGGCGCCGggccgggccggCCCCG-GGUCGcCGc -3'
miRNA:   3'- caUGUCGUGGUa----------GGGGCaCCAGUuGC- -5'
21558 3' -54.5 NC_004812.1 + 2919 0.69 0.849634
Target:  5'- -gACGGCGCCggcgaaggccagGUCCCgCGUGGagAGCa -3'
miRNA:   3'- caUGUCGUGG------------UAGGG-GCACCagUUGc -5'
21558 3' -54.5 NC_004812.1 + 59295 0.81 0.257345
Target:  5'- -cGCGGCACCcgCCCgccgcgagcuCGUGGUCGACGg -3'
miRNA:   3'- caUGUCGUGGuaGGG----------GCACCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 15334 0.68 0.872676
Target:  5'- -aGCGGCGCCAggugggCCCCGcGGaagCGACc -3'
miRNA:   3'- caUGUCGUGGUa-----GGGGCaCCa--GUUGc -5'
21558 3' -54.5 NC_004812.1 + 3145 0.76 0.488865
Target:  5'- cGUAgAGCACCAgcacgcgcacgUCCUCGgGGUCGGCGa -3'
miRNA:   3'- -CAUgUCGUGGU-----------AGGGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 74633 0.69 0.841544
Target:  5'- cGUAC-GCcCUGUCCCuCGUGGUCGGgGa -3'
miRNA:   3'- -CAUGuCGuGGUAGGG-GCACCAGUUgC- -5'
21558 3' -54.5 NC_004812.1 + 43136 0.68 0.879927
Target:  5'- -cGCAGCACgCAcUCCCGcagGGUCcGCGa -3'
miRNA:   3'- caUGUCGUG-GUaGGGGCa--CCAGuUGC- -5'
21558 3' -54.5 NC_004812.1 + 32121 0.68 0.879927
Target:  5'- -gGCGGCGCCGcgggggcuccUCCCCGcccgGG-CGGCGc -3'
miRNA:   3'- caUGUCGUGGU----------AGGGGCa---CCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 74914 0.71 0.74158
Target:  5'- -aGCAGCuCCG-CCCCGUGGccCAGCu -3'
miRNA:   3'- caUGUCGuGGUaGGGGCACCa-GUUGc -5'
21558 3' -54.5 NC_004812.1 + 125410 0.69 0.82479
Target:  5'- cUACAGCACCAgcgggacgaCCCUGcGGaCGACGg -3'
miRNA:   3'- cAUGUCGUGGUa--------GGGGCaCCaGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.