miRNA display CGI


Results 1 - 20 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 33753 1.07 0.001052
Target:  5'- aCGCGGCGCGACGCCGAGGACGCCGUGc -3'
miRNA:   3'- -GCGCCGCGCUGCGGCUCCUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 35069 0.77 0.151317
Target:  5'- uGCGuGCGCaagacccgccacgugGACGCCGAGGGCGCCc-- -3'
miRNA:   3'- gCGC-CGCG---------------CUGCGGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 54774 0.76 0.164927
Target:  5'- gGCGGCGCucGugGCCGAccuagcggGGGCGCCGc- -3'
miRNA:   3'- gCGCCGCG--CugCGGCU--------CCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 36615 0.65 0.644242
Target:  5'- gGgGGCGgGGgucUGCCgcgggagGAGGGCGCCGg- -3'
miRNA:   3'- gCgCCGCgCU---GCGG-------CUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 47764 0.79 0.111924
Target:  5'- aGCGcCGCGGCGCUGGGGGCGUCGg- -3'
miRNA:   3'- gCGCcGCGCUGCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 21170 0.78 0.114708
Target:  5'- uGCcGCGgGACGCCGAGGcgcGCGUCGUGg -3'
miRNA:   3'- gCGcCGCgCUGCGGCUCC---UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 87733 0.78 0.114708
Target:  5'- gGCGGCGCgGGCGCCGGGGcCGCgGa- -3'
miRNA:   3'- gCGCCGCG-CUGCGGCUCCuGCGgCac -5'
21558 5' -63.5 NC_004812.1 + 135987 0.78 0.123451
Target:  5'- gGCGGUGCGGCGCgUGAcGGACGCCcUGa -3'
miRNA:   3'- gCGCCGCGCUGCG-GCU-CCUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 89281 0.77 0.13281
Target:  5'- cCGCGGCGCGGCGCgGAGccccGGCGUCGc- -3'
miRNA:   3'- -GCGCCGCGCUGCGgCUC----CUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 26204 0.77 0.149869
Target:  5'- gGCGGCGCGcgcGCGCCGccGugGCCGg- -3'
miRNA:   3'- gCGCCGCGC---UGCGGCucCugCGGCac -5'
21558 5' -63.5 NC_004812.1 + 3912 0.77 0.139408
Target:  5'- gGCGGCGCGGCGgCGGGGcCGCgCGg- -3'
miRNA:   3'- gCGCCGCGCUGCgGCUCCuGCG-GCac -5'
21558 5' -63.5 NC_004812.1 + 27290 0.77 0.13281
Target:  5'- cCGCGucGCcgGCGGCGCCGAGGcCGCCGUc -3'
miRNA:   3'- -GCGC--CG--CGCUGCGGCUCCuGCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 5389 0.87 0.03008
Target:  5'- uCGCGGCGCGGgGCCGGGGGCGUCGc- -3'
miRNA:   3'- -GCGCCGCGCUgCGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 47074 0.77 0.142818
Target:  5'- aGCGcCGCGAuCGCCGGGGGCGCCu-- -3'
miRNA:   3'- gCGCcGCGCU-GCGGCUCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 2244 0.79 0.10141
Target:  5'- gCGCGGCGCGGCGgCGGGGuccGCGUCGg- -3'
miRNA:   3'- -GCGCCGCGCUGCgGCUCC---UGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 29603 0.78 0.130887
Target:  5'- gGCGGCGCGggccggccgGCgcuccgccgccgcccGCCGAGGACGCCGg- -3'
miRNA:   3'- gCGCCGCGC---------UG---------------CGGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 54550 0.77 0.145953
Target:  5'- gGCGGCGacuccgaCGGCGCCG-GGGCGCCGc- -3'
miRNA:   3'- gCGCCGC-------GCUGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 137944 0.76 0.16104
Target:  5'- gGCGGCG-GGCGCCGuGGACaugGCCGUc -3'
miRNA:   3'- gCGCCGCgCUGCGGCuCCUG---CGGCAc -5'
21558 5' -63.5 NC_004812.1 + 18552 0.79 0.10141
Target:  5'- gGCGGCGCGuuGCCG-GGA-GCCGUGg -3'
miRNA:   3'- gCGCCGCGCugCGGCuCCUgCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 58766 0.78 0.114708
Target:  5'- gGCGGCGCccGGCGagCGAGGGCGCgGUGg -3'
miRNA:   3'- gCGCCGCG--CUGCg-GCUCCUGCGgCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.