miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 154290 0.66 0.759992
Target:  5'- -uGCGCGCCuUCUGCGcg--CGCGCc- -3'
miRNA:   3'- uuCGCGCGG-AGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 28782 0.66 0.759992
Target:  5'- -uGCGCGCCuUCUGCGcg--CGCGCc- -3'
miRNA:   3'- uuCGCGCGG-AGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 30852 0.66 0.759992
Target:  5'- gGGGCGCGCC-CgGCcauggggggccGAGGgggCGCGCUc -3'
miRNA:   3'- -UUCGCGCGGaGgCG-----------UUUCa--GCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 83638 0.66 0.759034
Target:  5'- cGGgGCGCCgacgCCGCccugcgaGAGGUCGUGUc- -3'
miRNA:   3'- uUCgCGCGGa---GGCG-------UUUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 5318 0.66 0.750363
Target:  5'- cGAGCGCGUCgUCCGCcGGGgCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGG-AGGCGuUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 68893 0.66 0.750363
Target:  5'- -cGCGcCGCCUcCCGCucgcGGUCGCcauGCUg -3'
miRNA:   3'- uuCGC-GCGGA-GGCGuu--UCAGCG---CGAa -5'
21582 5' -58.9 NC_004812.1 + 53360 0.66 0.750363
Target:  5'- -cGCGCGCCUgCGCGAGaucaacuacGUC-CGCg- -3'
miRNA:   3'- uuCGCGCGGAgGCGUUU---------CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 34674 0.66 0.750363
Target:  5'- cAGCGCGUCccccagCUGCGAGG-CGUGCg- -3'
miRNA:   3'- uUCGCGCGGa-----GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 130826 0.66 0.750363
Target:  5'- cGAGCGCGUCgUCCGCcGGGgCGcCGCc- -3'
miRNA:   3'- -UUCGCGCGG-AGGCGuUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 36253 0.66 0.750363
Target:  5'- -cGCGCGCCcCCGCG-GGUUGCa--- -3'
miRNA:   3'- uuCGCGCGGaGGCGUuUCAGCGcgaa -5'
21582 5' -58.9 NC_004812.1 + 146344 0.66 0.744535
Target:  5'- -cGCGCGCCgucggCUGCGucGcggcguucguccucgUCGCGCUg -3'
miRNA:   3'- uuCGCGCGGa----GGCGUuuC---------------AGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 44256 0.66 0.740629
Target:  5'- -cGCGaggGCCgauagCCGCu-GGUCGCGCg- -3'
miRNA:   3'- uuCGCg--CGGa----GGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 117815 0.66 0.740629
Target:  5'- cGAGaGCGCC-CCGCAGAccaCGCGCg- -3'
miRNA:   3'- -UUCgCGCGGaGGCGUUUca-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 138391 0.66 0.740629
Target:  5'- cGAGCgGCGCCUCgaCGCGgaguacugggGGGUCGCGg-- -3'
miRNA:   3'- -UUCG-CGCGGAG--GCGU----------UUCAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 81701 0.66 0.740629
Target:  5'- -cGCGCGCCUgcaCGCGcgccuGGaCGCGCUc -3'
miRNA:   3'- uuCGCGCGGAg--GCGUu----UCaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 116602 0.66 0.740629
Target:  5'- -cGCGgGCCgCCGCGucuGUCGCGg-- -3'
miRNA:   3'- uuCGCgCGGaGGCGUuu-CAGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 142241 0.66 0.740629
Target:  5'- uGGUGCGCCgCCGCGcc--CGCGCg- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 49978 0.66 0.740629
Target:  5'- gGAGCgGCGaCUCCGguGAGcUgGCGCUg -3'
miRNA:   3'- -UUCG-CGCgGAGGCguUUC-AgCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 86950 0.66 0.740629
Target:  5'- cGGCGCGCCaaaCCGCAGAccuUCGcCGCc- -3'
miRNA:   3'- uUCGCGCGGa--GGCGUUUc--AGC-GCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.