Results 1 - 20 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21582 | 5' | -58.9 | NC_004812.1 | + | 156321 | 0.66 | 0.710892 |
Target: 5'- cGGGCGCgGCCggacggCgGCGGAG-CGCGCg- -3' miRNA: 3'- -UUCGCG-CGGa-----GgCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 154866 | 0.68 | 0.619001 |
Target: 5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3' miRNA: 3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 154290 | 0.66 | 0.759992 |
Target: 5'- -uGCGCGCCuUCUGCGcg--CGCGCc- -3' miRNA: 3'- uuCGCGCGG-AGGCGUuucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 152858 | 0.66 | 0.720885 |
Target: 5'- cGGCGcCGCCgcgCCGCugcuGG-CGCGCg- -3' miRNA: 3'- uUCGC-GCGGa--GGCGuu--UCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 152681 | 0.68 | 0.619001 |
Target: 5'- -cGCGCGCCgugCCGCGc---CGCGCg- -3' miRNA: 3'- uuCGCGCGGa--GGCGUuucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 152229 | 0.7 | 0.479249 |
Target: 5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3' miRNA: 3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 151371 | 0.7 | 0.498422 |
Target: 5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3' miRNA: 3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 150779 | 0.74 | 0.290411 |
Target: 5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3' miRNA: 3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 148964 | 0.67 | 0.6601 |
Target: 5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3' miRNA: 3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 148012 | 0.7 | 0.508136 |
Target: 5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3' miRNA: 3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 147076 | 0.68 | 0.608732 |
Target: 5'- gAAGCgGgGCCUCCGCAGccgaaCGCGCg- -3' miRNA: 3'- -UUCG-CgCGGAGGCGUUuca--GCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 146344 | 0.66 | 0.744535 |
Target: 5'- -cGCGCGCCgucggCUGCGucGcggcguucguccucgUCGCGCUg -3' miRNA: 3'- uuCGCGCGGa----GGCGUuuC---------------AGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 144254 | 0.69 | 0.537734 |
Target: 5'- cGGGCGCGCCccCCGCcAAGGUgGUGUg- -3' miRNA: 3'- -UUCGCGCGGa-GGCG-UUUCAgCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 143634 | 0.66 | 0.720885 |
Target: 5'- cGAGCGCgGCCccgggCGCGGAG-CGCGCg- -3' miRNA: 3'- -UUCGCG-CGGag---GCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 142241 | 0.66 | 0.740629 |
Target: 5'- uGGUGCGCCgCCGCGcc--CGCGCg- -3' miRNA: 3'- uUCGCGCGGaGGCGUuucaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 141600 | 0.67 | 0.649839 |
Target: 5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3' miRNA: 3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 141412 | 0.73 | 0.326 |
Target: 5'- gGAGCGCGCCUgCCGCAgcGUCcuccucuggGCGCc- -3' miRNA: 3'- -UUCGCGCGGA-GGCGUuuCAG---------CGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 140959 | 0.67 | 0.700833 |
Target: 5'- cGGGCGUGCU--CGCGGAG-CGCGCg- -3' miRNA: 3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 140621 | 0.68 | 0.639563 |
Target: 5'- uGGCGCGgggCCGCGGGGUCgGCGCc- -3' miRNA: 3'- uUCGCGCggaGGCGUUUCAG-CGCGaa -5' |
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21582 | 5' | -58.9 | NC_004812.1 | + | 140456 | 0.67 | 0.6601 |
Target: 5'- cGGGCGCGCCggaGCucgaugucccGGUCGCGCa- -3' miRNA: 3'- -UUCGCGCGGaggCGuu--------UCAGCGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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