miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 156321 0.66 0.710892
Target:  5'- cGGGCGCgGCCggacggCgGCGGAG-CGCGCg- -3'
miRNA:   3'- -UUCGCG-CGGa-----GgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 154866 0.68 0.619001
Target:  5'- gGGGCGCGggcUCgggCCGCGGAGgCGCGCg- -3'
miRNA:   3'- -UUCGCGC---GGa--GGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 154290 0.66 0.759992
Target:  5'- -uGCGCGCCuUCUGCGcg--CGCGCc- -3'
miRNA:   3'- uuCGCGCGG-AGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152858 0.66 0.720885
Target:  5'- cGGCGcCGCCgcgCCGCugcuGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGa--GGCGuu--UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152681 0.68 0.619001
Target:  5'- -cGCGCGCCgugCCGCGc---CGCGCg- -3'
miRNA:   3'- uuCGCGCGGa--GGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152229 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 151371 0.7 0.498422
Target:  5'- cGGCGCGCCccgacggCCGCGAGGcCGaCGCc- -3'
miRNA:   3'- uUCGCGCGGa------GGCGUUUCaGC-GCGaa -5'
21582 5' -58.9 NC_004812.1 + 150779 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148964 0.67 0.6601
Target:  5'- aGAGCGgGUCgUCgGCGAGG-CGCGCg- -3'
miRNA:   3'- -UUCGCgCGG-AGgCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 148012 0.7 0.508136
Target:  5'- gAGGCGCgGCCUCCGgGcGG-CGCGCc- -3'
miRNA:   3'- -UUCGCG-CGGAGGCgUuUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 147076 0.68 0.608732
Target:  5'- gAAGCgGgGCCUCCGCAGccgaaCGCGCg- -3'
miRNA:   3'- -UUCG-CgCGGAGGCGUUuca--GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 146344 0.66 0.744535
Target:  5'- -cGCGCGCCgucggCUGCGucGcggcguucguccucgUCGCGCUg -3'
miRNA:   3'- uuCGCGCGGa----GGCGUuuC---------------AGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 144254 0.69 0.537734
Target:  5'- cGGGCGCGCCccCCGCcAAGGUgGUGUg- -3'
miRNA:   3'- -UUCGCGCGGa-GGCG-UUUCAgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 143634 0.66 0.720885
Target:  5'- cGAGCGCgGCCccgggCGCGGAG-CGCGCg- -3'
miRNA:   3'- -UUCGCG-CGGag---GCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 142241 0.66 0.740629
Target:  5'- uGGUGCGCCgCCGCGcc--CGCGCg- -3'
miRNA:   3'- uUCGCGCGGaGGCGUuucaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 141600 0.67 0.649839
Target:  5'- uGGGCGCcuGCCccgUCCGCAAccuGcCGCGCUg -3'
miRNA:   3'- -UUCGCG--CGG---AGGCGUUu--CaGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 141412 0.73 0.326
Target:  5'- gGAGCGCGCCUgCCGCAgcGUCcuccucuggGCGCc- -3'
miRNA:   3'- -UUCGCGCGGA-GGCGUuuCAG---------CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 140959 0.67 0.700833
Target:  5'- cGGGCGUGCU--CGCGGAG-CGCGCg- -3'
miRNA:   3'- -UUCGCGCGGagGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 140621 0.68 0.639563
Target:  5'- uGGCGCGgggCCGCGGGGUCgGCGCc- -3'
miRNA:   3'- uUCGCGCggaGGCGUUUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 140456 0.67 0.6601
Target:  5'- cGGGCGCGCCggaGCucgaugucccGGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCGGaggCGuu--------UCAGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.