miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 5' -58.9 NC_004812.1 + 100364 0.77 0.182677
Target:  5'- gGGGCGCGCCcCCGCGgacGAGUCgGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGU---UUCAG-CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 152229 0.7 0.479249
Target:  5'- cGGGCGaCGCCUCgGCcAGGgCGCGCg- -3'
miRNA:   3'- -UUCGC-GCGGAGgCGuUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 94225 0.7 0.488792
Target:  5'- gGGGCGCGCUUCagGCGAccGUCGUGCa- -3'
miRNA:   3'- -UUCGCGCGGAGg-CGUUu-CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 132849 0.66 0.759992
Target:  5'- cGAGCGCGCgCggUGCuugguGUCGCGCa- -3'
miRNA:   3'- -UUCGCGCG-GagGCGuuu--CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 85419 0.74 0.30427
Target:  5'- uGGCGCGgC-CCGCGGuGUCGCGCUc -3'
miRNA:   3'- uUCGCGCgGaGGCGUUuCAGCGCGAa -5'
21582 5' -58.9 NC_004812.1 + 136251 0.74 0.318631
Target:  5'- cAAGCGCGaCUuuGCGGAGgCGCGCUUu -3'
miRNA:   3'- -UUCGCGCgGAggCGUUUCaGCGCGAA- -5'
21582 5' -58.9 NC_004812.1 + 100960 0.73 0.341116
Target:  5'- gGGGCGCGCCgCCGCGGAcGUC-CGCg- -3'
miRNA:   3'- -UUCGCGCGGaGGCGUUU-CAGcGCGaa -5'
21582 5' -58.9 NC_004812.1 + 112312 0.72 0.372844
Target:  5'- cGAGuCGCGCCUcgggcggcuggCCGCGGaggcGGUCGCGCg- -3'
miRNA:   3'- -UUC-GCGCGGA-----------GGCGUU----UCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 127686 0.71 0.424056
Target:  5'- cGGGCGCGCaUUCCGCGAaccGGagGCGCg- -3'
miRNA:   3'- -UUCGCGCG-GAGGCGUU---UCagCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 105473 0.7 0.479249
Target:  5'- -cGCGCGCCUCCcCGGGGUaguaggGCGCg- -3'
miRNA:   3'- uuCGCGCGGAGGcGUUUCAg-----CGCGaa -5'
21582 5' -58.9 NC_004812.1 + 47326 0.71 0.45119
Target:  5'- cGGGCGCgcagguagGCCUCUGC--GGUCGCGCc- -3'
miRNA:   3'- -UUCGCG--------CGGAGGCGuuUCAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 26175 0.71 0.418747
Target:  5'- cAGCGcCGCCUCCGCGGgccgcagcgagcggcGG-CGCGCg- -3'
miRNA:   3'- uUCGC-GCGGAGGCGUU---------------UCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 1738 0.77 0.201948
Target:  5'- -cGCGCGCCUCCGCGgcccGAGccCGCGCc- -3'
miRNA:   3'- uuCGCGCGGAGGCGU----UUCa-GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 46954 0.7 0.466983
Target:  5'- -cGCGCGUC-CCGCGAGaugcgaucccagucGUCGCGCg- -3'
miRNA:   3'- uuCGCGCGGaGGCGUUU--------------CAGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 74253 0.74 0.290411
Target:  5'- -cGCGCGUCUCUGCGAGGcCGCGg-- -3'
miRNA:   3'- uuCGCGCGGAGGCGUUUCaGCGCgaa -5'
21582 5' -58.9 NC_004812.1 + 82041 0.72 0.381083
Target:  5'- uGGCcCGCCUCCGCGAggacguGGUgGCGCg- -3'
miRNA:   3'- uUCGcGCGGAGGCGUU------UCAgCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 91505 0.7 0.469799
Target:  5'- gGGGcCGCGCCagccacuccUCCGCGGGG-CGCGCg- -3'
miRNA:   3'- -UUC-GCGCGG---------AGGCGUUUCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 20104 0.7 0.479249
Target:  5'- gGAGCGCGCCgCgCGCAgcGgCGCGCg- -3'
miRNA:   3'- -UUCGCGCGGaG-GCGUuuCaGCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 150779 0.74 0.290411
Target:  5'- cGAGCGCGCCgccggcCCGCAGAGcccgcCGCGCc- -3'
miRNA:   3'- -UUCGCGCGGa-----GGCGUUUCa----GCGCGaa -5'
21582 5' -58.9 NC_004812.1 + 62257 0.73 0.341116
Target:  5'- cAGCGCGCCggggCCGCGccG-CGCGCg- -3'
miRNA:   3'- uUCGCGCGGa---GGCGUuuCaGCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.