miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 156535 0.68 0.435969
Target:  5'- -cGUCCCucgcgagugcgcGCGCGuGGCGCcGCGCCGc -3'
miRNA:   3'- cuCAGGGu-----------CGCGU-CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 156458 0.67 0.501062
Target:  5'- cGGGcCgCgGGCGCGgcGGCGCgGCGCCAc -3'
miRNA:   3'- -CUCaG-GgUCGCGU--CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 156125 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 156020 0.66 0.587748
Target:  5'- aGGGgacgCCCGGgGcCGGGgGCcGCGCCGc -3'
miRNA:   3'- -CUCa---GGGUCgC-GUCCgCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 155899 0.66 0.587748
Target:  5'- cGGGg-CCGGCGCccGGGCuGCcGCGCCGa -3'
miRNA:   3'- -CUCagGGUCGCG--UCCG-CGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 155593 0.66 0.60749
Target:  5'- cGGGcCCUcGCGgGGGCGCgGCcccgGCCGGg -3'
miRNA:   3'- -CUCaGGGuCGCgUCCGCGaCG----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 154746 0.69 0.387239
Target:  5'- gGGGUCgCGGaggaGCGGGCcgggGCUGCGCgGGg -3'
miRNA:   3'- -CUCAGgGUCg---CGUCCG----CGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 154656 0.67 0.529435
Target:  5'- ---cCCCGGCGCccGGCGC-GCGCgCGGc -3'
miRNA:   3'- cucaGGGUCGCGu-CCGCGaCGCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 153743 0.68 0.455357
Target:  5'- cGGUgCCGGCGCGcacggcguccucGGCGUcGCGCCGc -3'
miRNA:   3'- cUCAgGGUCGCGU------------CCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 153647 0.68 0.455357
Target:  5'- -cGUCUCGGCGCuGGGCGCgcaggGCGUg-- -3'
miRNA:   3'- cuCAGGGUCGCG-UCCGCGa----CGCGguc -5'
21585 3' -62.7 NC_004812.1 + 153347 0.72 0.278223
Target:  5'- -cGUCUCcucgggcggcgggGGCGCGGGCGCcccuggcggGCGCCGGg -3'
miRNA:   3'- cuCAGGG-------------UCGCGUCCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 153252 0.68 0.437712
Target:  5'- gGGGuUCCCGGCGgGGGcCGggGCGCgGGg -3'
miRNA:   3'- -CUC-AGGGUCGCgUCC-GCgaCGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 153067 0.67 0.510448
Target:  5'- cGGGcCUgGGCGCGGGC-CUGgGCCuGg -3'
miRNA:   3'- -CUCaGGgUCGCGUCCGcGACgCGGuC- -5'
21585 3' -62.7 NC_004812.1 + 152992 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152852 0.69 0.388049
Target:  5'- -cGUCgCCGGCGCcgccgcgccgcugcuGGCGCgcggcccGCGCCAGg -3'
miRNA:   3'- cuCAG-GGUCGCGu--------------CCGCGa------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152807 0.66 0.594646
Target:  5'- cAGgCCgGGCGCGGGC-CUgaggucgggccugaGCGCCGGg -3'
miRNA:   3'- cUCaGGgUCGCGUCCGcGA--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152632 0.67 0.539025
Target:  5'- aGGUgCCCGG-GCcGGCGCgcggcggggggGCGCCGGg -3'
miRNA:   3'- cUCA-GGGUCgCGuCCGCGa----------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 151964 0.66 0.597607
Target:  5'- cGAGccccUCCCcGCGCGGGCGUccCGCCc- -3'
miRNA:   3'- -CUC----AGGGuCGCGUCCGCGacGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 151908 0.68 0.43684
Target:  5'- -cGUCCUcGCGCggcgggccggGGGCGCUccccucgGCGCCGGc -3'
miRNA:   3'- cuCAGGGuCGCG----------UCCGCGA-------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 149693 0.67 0.501062
Target:  5'- ---cCCCGGCccGCGGGCGCagcGCGCCc- -3'
miRNA:   3'- cucaGGGUCG--CGUCCGCGa--CGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.