miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 136303 0.77 0.125707
Target:  5'- cGGUgCCuGCGCGcGCGCUGCGCCGGc -3'
miRNA:   3'- cUCAgGGuCGCGUcCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 38613 0.71 0.31907
Target:  5'- cGAGUCCgCGGCGgGGGUcuCcGCGCCGGg -3'
miRNA:   3'- -CUCAGG-GUCGCgUCCGc-GaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 71181 0.71 0.325464
Target:  5'- uGGUCCCGGCGCugacgguAGGUGaa-CGCCAGg -3'
miRNA:   3'- cUCAGGGUCGCG-------UCCGCgacGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152992 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 156125 0.74 0.205702
Target:  5'- uGAGUUCgGGCaGCAGGCGCgUGCGCacgCAGg -3'
miRNA:   3'- -CUCAGGgUCG-CGUCCGCG-ACGCG---GUC- -5'
21585 3' -62.7 NC_004812.1 + 3728 0.73 0.231655
Target:  5'- gGAGcgcaCCUGGCGCGGGcCGC-GCGCCAGc -3'
miRNA:   3'- -CUCa---GGGUCGCGUCC-GCGaCGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 78990 0.72 0.254359
Target:  5'- cGGUUUaCAGCGCcaAGGCGCUGCugGCCGGg -3'
miRNA:   3'- cUCAGG-GUCGCG--UCCGCGACG--CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 48112 0.72 0.254359
Target:  5'- ---gCCCcGUGCGGGCGCUGgCGCCGu -3'
miRNA:   3'- cucaGGGuCGCGUCCGCGAC-GCGGUc -5'
21585 3' -62.7 NC_004812.1 + 43667 0.72 0.278858
Target:  5'- --uUCaCCAGCGaCAcGGCGCUGCGCgGGc -3'
miRNA:   3'- cucAG-GGUCGC-GU-CCGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 145558 0.71 0.31907
Target:  5'- uGGUCCCGGgGuCGGGCGCcaccggcgGCGCCc- -3'
miRNA:   3'- cUCAGGGUCgC-GUCCGCGa-------CGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 2231 0.71 0.291796
Target:  5'- cGG-CCCAGCGCAcgcgcGGCGCgGCGgCGGg -3'
miRNA:   3'- cUCaGGGUCGCGU-----CCGCGaCGCgGUC- -5'
21585 3' -62.7 NC_004812.1 + 153347 0.72 0.278223
Target:  5'- -cGUCUCcucgggcggcgggGGCGCGGGCGCcccuggcggGCGCCGGg -3'
miRNA:   3'- cuCAGGG-------------UCGCGUCCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 97554 0.76 0.157359
Target:  5'- cAGUUCCAGC-C-GGUGCUGCGCCGGc -3'
miRNA:   3'- cUCAGGGUCGcGuCCGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 2363 0.71 0.298439
Target:  5'- cGGG-CCCGGCGCGcgcGGCGUcgcgguccaGCGCCAGg -3'
miRNA:   3'- -CUCaGGGUCGCGU---CCGCGa--------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 3837 0.75 0.173622
Target:  5'- aGGUCCCcGCGCAGGCGCaugaGCaCCAGc -3'
miRNA:   3'- cUCAGGGuCGCGUCCGCGa---CGcGGUC- -5'
21585 3' -62.7 NC_004812.1 + 134659 0.72 0.266381
Target:  5'- aGGUCCU-GCaGgAGGCGCUGCGCgAGg -3'
miRNA:   3'- cUCAGGGuCG-CgUCCGCGACGCGgUC- -5'
21585 3' -62.7 NC_004812.1 + 105084 0.71 0.312076
Target:  5'- ---cCCCGGCGC---CGCUGCGCCGGg -3'
miRNA:   3'- cucaGGGUCGCGuccGCGACGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 4629 0.71 0.319775
Target:  5'- cGGGcgCCCacacgGGCGCGGGCGCgccggcggccucguaGCGCCGGc -3'
miRNA:   3'- -CUCa-GGG-----UCGCGUCCGCGa--------------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 41158 0.74 0.196045
Target:  5'- cGAG-CCCAGCGgcgcgccgcCAGGCGCUcucggcgccGCGCCGGu -3'
miRNA:   3'- -CUCaGGGUCGC---------GUCCGCGA---------CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 137540 0.73 0.231655
Target:  5'- cGG-CCCGGCGCGGGC-CUGgGCCGc -3'
miRNA:   3'- cUCaGGGUCGCGUCCGcGACgCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.