miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 5' -59.1 NC_004812.1 + 5620 0.66 0.803405
Target:  5'- gGGCCGGAgGCGGcUCgggggCCGgGCCcGGGGUc -3'
miRNA:   3'- -UCGGCCU-UGUCaAG-----GGUgUGG-CCCCA- -5'
21585 5' -59.1 NC_004812.1 + 105227 0.66 0.803405
Target:  5'- cGGCCGGcGCc--UCCCACuGCUGGGcGUa -3'
miRNA:   3'- -UCGGCCuUGucaAGGGUG-UGGCCC-CA- -5'
21585 5' -59.1 NC_004812.1 + 6912 0.66 0.803405
Target:  5'- -cUCGGGGCGcgcuGcgCCCGCgggGCCGGGGUg -3'
miRNA:   3'- ucGGCCUUGU----CaaGGGUG---UGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 122404 0.66 0.803405
Target:  5'- uGCCGGAguagcuGCGGgcgUCCgAguUCGGGGa -3'
miRNA:   3'- uCGGCCU------UGUCa--AGGgUguGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 37813 0.66 0.803405
Target:  5'- -cUCGGGGCGcgcuGcgCCCGCgggGCCGGGGUg -3'
miRNA:   3'- ucGGCCUUGU----CaaGGGUG---UGGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 36521 0.66 0.803405
Target:  5'- gGGCCGGAgGCGGcUCgggggCCGgGCCcGGGGUc -3'
miRNA:   3'- -UCGGCCU-UGUCaAG-----GGUgUGG-CCCCA- -5'
21585 5' -59.1 NC_004812.1 + 45118 0.66 0.803405
Target:  5'- gAGUCGGGGCGaugUCCC-CAgaGGGGUc -3'
miRNA:   3'- -UCGGCCUUGUca-AGGGuGUggCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 84060 0.66 0.802534
Target:  5'- cGCCcccccgaGGcGCGGUUCCCGuuCGCCGcGGGc -3'
miRNA:   3'- uCGG-------CCuUGUCAAGGGU--GUGGC-CCCa -5'
21585 5' -59.1 NC_004812.1 + 76690 0.66 0.800787
Target:  5'- cGCgGGaAACAGgUCCCGCAggaccuccgcgaagUUGGGGUg -3'
miRNA:   3'- uCGgCC-UUGUCaAGGGUGU--------------GGCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 55006 0.66 0.79463
Target:  5'- uAGUCGGGGCGGcgcagcucgacUUCuCCGCACCGGuagacGGa -3'
miRNA:   3'- -UCGGCCUUGUC-----------AAG-GGUGUGGCC-----CCa -5'
21585 5' -59.1 NC_004812.1 + 72677 0.66 0.79463
Target:  5'- gAGCCcggcgaGAACG---UCCGCGCCGGGGg -3'
miRNA:   3'- -UCGGc-----CUUGUcaaGGGUGUGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 147751 0.66 0.79463
Target:  5'- cGCgGGAcGCGGggcUCCCGCgggACgCGGGGUc -3'
miRNA:   3'- uCGgCCU-UGUCa--AGGGUG---UG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 99507 0.66 0.79463
Target:  5'- cGCCGuucuuGAACGGggUCCGCGCCaggagcuuGGGGa -3'
miRNA:   3'- uCGGC-----CUUGUCaaGGGUGUGG--------CCCCa -5'
21585 5' -59.1 NC_004812.1 + 35342 0.66 0.785714
Target:  5'- cGCCaGGAGCAGa-CCCAgGguguCCGGGGc -3'
miRNA:   3'- uCGG-CCUUGUCaaGGGUgU----GGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 100868 0.66 0.785714
Target:  5'- cAGCuCGGcgAACAGggcgUCCCGgaACgCGGGGUg -3'
miRNA:   3'- -UCG-GCC--UUGUCa---AGGGUg-UG-GCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 95631 0.66 0.785714
Target:  5'- uGGCCGucgucguCGGgUCCCGCACCacGGGGc -3'
miRNA:   3'- -UCGGCcuu----GUCaAGGGUGUGG--CCCCa -5'
21585 5' -59.1 NC_004812.1 + 146866 0.66 0.785714
Target:  5'- gGGCCuGGuGGCGGUcCCCuC-CCGGGGa -3'
miRNA:   3'- -UCGG-CC-UUGUCAaGGGuGuGGCCCCa -5'
21585 5' -59.1 NC_004812.1 + 51588 0.66 0.785714
Target:  5'- cGCCGGGuCAGU--CgGCACCGcGGGg -3'
miRNA:   3'- uCGGCCUuGUCAagGgUGUGGC-CCCa -5'
21585 5' -59.1 NC_004812.1 + 54626 0.66 0.784815
Target:  5'- gGGCCGGAgaggcccGCGGg-CUCAcCACgGGGGUc -3'
miRNA:   3'- -UCGGCCU-------UGUCaaGGGU-GUGgCCCCA- -5'
21585 5' -59.1 NC_004812.1 + 73050 0.66 0.784815
Target:  5'- aGGCCGGGucgcugcGCAGgg-CCACGacgaCGGGGg -3'
miRNA:   3'- -UCGGCCU-------UGUCaagGGUGUg---GCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.