miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 45339 0.81 0.108665
Target:  5'- cGCCGUgucGUugCCCGCGCCCAcGGgCCGCa -3'
miRNA:   3'- -CGGCA---CAugGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 50115 0.72 0.421349
Target:  5'- cGCCGcGga-CCCGCGCCCcagccacGGGUUCGCg -3'
miRNA:   3'- -CGGCaCaugGGGUGCGGG-------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 26345 0.71 0.448266
Target:  5'- aGCCGUG-GCCCgGCGCCgAGccgCCGCc -3'
miRNA:   3'- -CGGCACaUGGGgUGCGGgUCca-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 50214 0.65 0.770044
Target:  5'- gGCCGUGaggccgagcggcgACCCCGaaaCCCgggcgaaggugAGGUCCACc -3'
miRNA:   3'- -CGGCACa------------UGGGGUgc-GGG-----------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 140385 0.75 0.255655
Target:  5'- gGCCGgccgGCUCCGCcuccggcgcgcgGCCCGGGUCCGCc -3'
miRNA:   3'- -CGGCaca-UGGGGUG------------CGGGUCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 151093 0.75 0.267719
Target:  5'- cGCCGUGU-CCCUgcugcgcgGCGCCCGGcGUCCu- -3'
miRNA:   3'- -CGGCACAuGGGG--------UGCGGGUC-CAGGug -5'
21602 3' -60.2 NC_004812.1 + 25624 0.74 0.30666
Target:  5'- cGCCGUGU-CCCCGCGCCagcuGGcCCuGCu -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGgu--CCaGG-UG- -5'
21602 3' -60.2 NC_004812.1 + 27578 0.74 0.327702
Target:  5'- cGCCGcg-GCCCCGCcCCCGGGgCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 49072 0.73 0.365099
Target:  5'- cGCCGacGUGCUCguCGCCCAGG-CCAUc -3'
miRNA:   3'- -CGGCa-CAUGGGguGCGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 22696 0.72 0.413719
Target:  5'- cCCGcGUcCCCCcCGCCCGGGguuaCCACg -3'
miRNA:   3'- cGGCaCAuGGGGuGCGGGUCCa---GGUG- -5'
21602 3' -60.2 NC_004812.1 + 34247 0.72 0.405341
Target:  5'- cGCCGc--GCCCCGCGCCCcGGcccCCGCc -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGuCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 31421 0.73 0.365099
Target:  5'- gGCCGgGgcggGCCCgCGCGCCCGGGcCCu- -3'
miRNA:   3'- -CGGCaCa---UGGG-GUGCGGGUCCaGGug -5'
21602 3' -60.2 NC_004812.1 + 99699 0.8 0.136349
Target:  5'- cGCCGUGcggcgGCgCCUGCGCCCAGGgcuggCCGCa -3'
miRNA:   3'- -CGGCACa----UG-GGGUGCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 134591 0.72 0.413719
Target:  5'- cGUCGgggaGUACgCCAUGCCCGGGUUCuCg -3'
miRNA:   3'- -CGGCa---CAUGgGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 40904 0.78 0.183322
Target:  5'- uGCCGUGU-CCCCAUGCCCuGGGcUCGCc -3'
miRNA:   3'- -CGGCACAuGGGGUGCGGG-UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 60569 0.73 0.357388
Target:  5'- gGCCGgcggagcaUGcGCaCCCGCGUCCAGGUCC-Cg -3'
miRNA:   3'- -CGGC--------ACaUG-GGGUGCGGGUCCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 7598 0.72 0.413719
Target:  5'- aGCCG-GcGCCgCCGCGCCCGGcccgCCGCa -3'
miRNA:   3'- -CGGCaCaUGG-GGUGCGGGUCca--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 59196 0.71 0.447383
Target:  5'- cGCCGUcgACCCaccaguaCGCGCCCgAGGcCCGCg -3'
miRNA:   3'- -CGGCAcaUGGG-------GUGCGGG-UCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 119407 0.76 0.244042
Target:  5'- cGUCGUGgacgGCCCCGCGCUgcugacgcugCAGGUCCucGCg -3'
miRNA:   3'- -CGGCACa---UGGGGUGCGG----------GUCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 109405 0.74 0.293217
Target:  5'- aGUCGgg-GCgCCGCGCCCccAGGUCCACc -3'
miRNA:   3'- -CGGCacaUGgGGUGCGGG--UCCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.