miRNA display CGI


Results 1 - 20 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 156577 0.8 0.095682
Target:  5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 156541 0.7 0.383324
Target:  5'- uCGCGAgUgCGC-GCGCGugGcGCCGCgCCg -3'
miRNA:   3'- -GCGCU-GgGUGuCGCGCugC-CGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 156490 0.68 0.490127
Target:  5'- gCGCGcACUCGCgagggacgggccggGGCGCGcGCGGggccgggagcCCGCCCg -3'
miRNA:   3'- -GCGC-UGGGUG--------------UCGCGC-UGCC----------GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 156456 0.76 0.156358
Target:  5'- gGCGGgCCGCGGgCGCGGCGGCgcggCGCCa -3'
miRNA:   3'- gCGCUgGGUGUC-GCGCUGCCG----GCGGg -5'
21606 5' -63.5 NC_004812.1 + 156407 0.67 0.538659
Target:  5'- gCGCGACCCG-GGCccuccccCGGCGGCgCGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGc------GCUGCCG-GCGgG- -5'
21606 5' -63.5 NC_004812.1 + 156230 0.69 0.43189
Target:  5'- gCGgGGCgCCGCGggauGCGcCGGCGGCgGCCg -3'
miRNA:   3'- -GCgCUG-GGUGU----CGC-GCUGCCGgCGGg -5'
21606 5' -63.5 NC_004812.1 + 156141 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 156096 0.75 0.180351
Target:  5'- gCGCgGGCCCGCcccGGcCGCGGCGGCCGUg- -3'
miRNA:   3'- -GCG-CUGGGUG---UC-GCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 156061 0.71 0.36044
Target:  5'- gGCGuCgCGCGGCGCGuC-GCCGCCUu -3'
miRNA:   3'- gCGCuGgGUGUCGCGCuGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 156037 0.72 0.291225
Target:  5'- cCGCG-CCCGCGGCuccaCG-CGGCCGCgCg -3'
miRNA:   3'- -GCGCuGGGUGUCGc---GCuGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 155998 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155927 0.69 0.4153
Target:  5'- cCG-GACCCGgGGaCGCGcuccccuCGcGCCGCCCg -3'
miRNA:   3'- -GCgCUGGGUgUC-GCGCu------GC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155847 0.68 0.474988
Target:  5'- aGgGGCCCGCGGCGCcgggaGGCGaGgCGCgCg -3'
miRNA:   3'- gCgCUGGGUGUCGCG-----CUGC-CgGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 155803 0.7 0.407153
Target:  5'- --gGACCCccggccgggcgGCGGCgGgGGCGGCgGCCCa -3'
miRNA:   3'- gcgCUGGG-----------UGUCG-CgCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155574 0.66 0.633794
Target:  5'- aGgGGCgCGC-GCG-GGCGGCCggGCCCu -3'
miRNA:   3'- gCgCUGgGUGuCGCgCUGCCGG--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 155492 0.69 0.43189
Target:  5'- uGCGauggGCCC-CGGCgaaGCGACccgGGCCGCCg -3'
miRNA:   3'- gCGC----UGGGuGUCG---CGCUG---CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 155347 0.77 0.141663
Target:  5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3'
miRNA:   3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155288 0.72 0.310838
Target:  5'- cCGCGgaccGCCCGCGGacCGCccGCGGaCCGCCCu -3'
miRNA:   3'- -GCGC----UGGGUGUC--GCGc-UGCC-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155251 0.7 0.367961
Target:  5'- gGCGGgCCGagggggGGCGCGGCGGaCGCCa -3'
miRNA:   3'- gCGCUgGGUg-----UCGCGCUGCCgGCGGg -5'
21606 5' -63.5 NC_004812.1 + 155213 0.66 0.633794
Target:  5'- gGCGGCgagagggggCGCGGCGCGggGCGGgCCGUCg -3'
miRNA:   3'- gCGCUGg--------GUGUCGCGC--UGCC-GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.