Results 1 - 20 of 1131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21702 | 3' | -52.4 | NC_004812.1 | + | 3951 | 0.85 | 0.20371 |
Target: 5'- cGCgcGGCCGCCAGCCcgGGCACGGCGGCc -3' miRNA: 3'- -CGgaUUGGUGGUCGG--UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 79453 | 0.79 | 0.460302 |
Target: 5'- cGCCgcgggcgGGCUGCCGGCCGAgACG-CGGCg -3' miRNA: 3'- -CGGa------UUGGUGGUCGGUUgUGUuGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 14422 | 0.78 | 0.489167 |
Target: 5'- gGCC-AGCCccgcGCCGGCCAGCGCGccaacgAUGGCg -3' miRNA: 3'- -CGGaUUGG----UGGUCGGUUGUGU------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 140637 | 0.66 | 0.986032 |
Target: 5'- gGUCggcGCCGCCGGCCGcgGgGCGucCGGUc -3' miRNA: 3'- -CGGau-UGGUGGUCGGU--UgUGUu-GCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 105569 | 0.82 | 0.301735 |
Target: 5'- gGCCUGGCUGCCGGUCcGCGgCGAUGGCa -3' miRNA: 3'- -CGGAUUGGUGGUCGGuUGU-GUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 70924 | 0.82 | 0.316269 |
Target: 5'- gGUCUGGCCGCCAG-CGAUACAggcggGCGGCg -3' miRNA: 3'- -CGGAUUGGUGGUCgGUUGUGU-----UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 128043 | 0.81 | 0.346902 |
Target: 5'- cGCC-AGCUGCCGGCCgAACAUcGCGGCg -3' miRNA: 3'- -CGGaUUGGUGGUCGG-UUGUGuUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 56639 | 0.81 | 0.354884 |
Target: 5'- uGCCUGGCC-CCcGCCGGCACGGCccaccGGCa -3' miRNA: 3'- -CGGAUUGGuGGuCGGUUGUGUUG-----CCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 82694 | 0.8 | 0.3796 |
Target: 5'- cGCC--ACCGCCAGCCGggcugGCGCGAcuCGGCg -3' miRNA: 3'- -CGGauUGGUGGUCGGU-----UGUGUU--GCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 1440 | 0.79 | 0.441569 |
Target: 5'- gGCCggGGCCGCgagGGCCgGGCACGGCGGCg -3' miRNA: 3'- -CGGa-UUGGUGg--UCGG-UUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 89209 | 0.79 | 0.432365 |
Target: 5'- aGCCggGGCC-CCGGCUccGCGCGGCGGCg -3' miRNA: 3'- -CGGa-UUGGuGGUCGGu-UGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 25951 | 0.81 | 0.362996 |
Target: 5'- gGCCcgGACCGCgGGCCGACGCcgccguccccgGGCGGCc -3' miRNA: 3'- -CGGa-UUGGUGgUCGGUUGUG-----------UUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 62059 | 0.84 | 0.230968 |
Target: 5'- aGCCccGCCACCAgggccGCCGACAgGGCGGCg -3' miRNA: 3'- -CGGauUGGUGGU-----CGGUUGUgUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 27438 | 0.79 | 0.440643 |
Target: 5'- aGCCUGcGCCcccuGCUGGCCGACGCAgacgcggGCGGCg -3' miRNA: 3'- -CGGAU-UGG----UGGUCGGUUGUGU-------UGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 48926 | 0.82 | 0.293963 |
Target: 5'- cGCCUGgcccGCCACCAgcuuggcGCCGACGCGGCGaGCc -3' miRNA: 3'- -CGGAU----UGGUGGU-------CGGUUGUGUUGC-CG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 111312 | 0.81 | 0.354884 |
Target: 5'- gGCCUGcCCGCCAacGCCAGucugccCGCGGCGGCg -3' miRNA: 3'- -CGGAUuGGUGGU--CGGUU------GUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 76979 | 0.79 | 0.441569 |
Target: 5'- gGCCggGGCCGCCGGCCAcggccgcccuCACcGCGGCc -3' miRNA: 3'- -CGGa-UUGGUGGUCGGUu---------GUGuUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 3745 | 0.79 | 0.460302 |
Target: 5'- gGCC--GCgCGCCAGCagCGGCGCGGCGGCg -3' miRNA: 3'- -CGGauUG-GUGGUCG--GUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 79854 | 0.82 | 0.294663 |
Target: 5'- gGCCcugGAgCACCcgacGGCCGACACGGCGGCc -3' miRNA: 3'- -CGGa--UUgGUGG----UCGGUUGUGUUGCCG- -5' |
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21702 | 3' | -52.4 | NC_004812.1 | + | 40796 | 0.81 | 0.331325 |
Target: 5'- gGCCcGGCCGCCucGCCu-CACAACGGCu -3' miRNA: 3'- -CGGaUUGGUGGu-CGGuuGUGUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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