miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 156459 0.66 0.707977
Target:  5'- gGGCCGc----GGGCGcGGCGGCgCGGc -3'
miRNA:   3'- gUCGGCaacacUCCGCuCCGCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 156218 0.68 0.610235
Target:  5'- -cGCgCGUgg-GGGGCGGGGCGccgcgggaugcGCCGGc -3'
miRNA:   3'- guCG-GCAacaCUCCGCUCCGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 156066 0.66 0.698341
Target:  5'- -cGCCGggGcggGAGGCGGGaG-GGcCCGGg -3'
miRNA:   3'- guCGGCaaCa--CUCCGCUC-CgCC-GGCC- -5'
21702 5' -60.9 NC_004812.1 + 155859 0.75 0.264071
Target:  5'- -cGCCGg---GAGGCGAGGCGcGCgCGGc -3'
miRNA:   3'- guCGGCaacaCUCCGCUCCGC-CG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 155588 0.7 0.464355
Target:  5'- gCGGCCGggcccucgcgGGGGCGcGGCcccGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca------CUCCGCuCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155541 0.68 0.610235
Target:  5'- gCGGCCGggcagGAGGaGAccGCGGCCGGg -3'
miRNA:   3'- -GUCGGCaaca-CUCCgCUc-CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155380 0.67 0.681846
Target:  5'- aAGCCGUccgccaggaaccccgGGGGCcGGGCcgGGCCGGg -3'
miRNA:   3'- gUCGGCAaca------------CUCCGcUCCG--CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155254 0.69 0.561476
Target:  5'- gGGCCGagGgGGGGCGcGGCGGacgccaaaCCGGg -3'
miRNA:   3'- gUCGGCaaCaCUCCGCuCCGCC--------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 155164 0.66 0.745848
Target:  5'- gCGGUCGUg--GGGGCGGGGa--CCGGg -3'
miRNA:   3'- -GUCGGCAacaCUCCGCUCCgccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155032 0.66 0.745848
Target:  5'- gAGCCGUgcgGGGGgGAcccgGGCGGCuCGc -3'
miRNA:   3'- gUCGGCAacaCUCCgCU----CCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 154879 0.69 0.51384
Target:  5'- gGGCCGcg--GAGGCGcGcGgGGCCGGg -3'
miRNA:   3'- gUCGGCaacaCUCCGCuC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 154823 0.7 0.495241
Target:  5'- -uGCUGcgGcGGGGCGGaGCGGCCGGc -3'
miRNA:   3'- guCGGCaaCaCUCCGCUcCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 154787 0.66 0.698341
Target:  5'- gAGgaGggGggaggaGAGGCGAGGCGcgcaGCCGGg -3'
miRNA:   3'- gUCggCaaCa-----CUCCGCUCCGC----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 154449 0.74 0.282671
Target:  5'- gGGCCGggcGUcccGGGGCGAGcgaggcggcGCGGCCGGg -3'
miRNA:   3'- gUCGGCaa-CA---CUCCGCUC---------CGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 153681 0.66 0.736497
Target:  5'- -cGCCGaggGUgacGAGGaCGGGGCGGgcucccCCGGg -3'
miRNA:   3'- guCGGCaa-CA---CUCC-GCUCCGCC------GGCC- -5'
21702 5' -60.9 NC_004812.1 + 153431 0.71 0.450171
Target:  5'- aAGCCGgcggUGagucgGGGGCGGGG-GGCgCGGg -3'
miRNA:   3'- gUCGGCa---ACa----CUCCGCUCCgCCG-GCC- -5'
21702 5' -60.9 NC_004812.1 + 153266 0.72 0.359673
Target:  5'- gGGCCGggGcgcGGGGCGcGGCGGCCc- -3'
miRNA:   3'- gUCGGCaaCa--CUCCGCuCCGCCGGcc -5'
21702 5' -60.9 NC_004812.1 + 153204 0.71 0.441428
Target:  5'- gGGCCGcc--GGGGgGAGGCGGgCGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgCUCCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 153023 0.67 0.678923
Target:  5'- gGGCCag-GgccuGGGCGAGGaCGGCCuGGg -3'
miRNA:   3'- gUCGGcaaCac--UCCGCUCC-GCCGG-CC- -5'
21702 5' -60.9 NC_004812.1 + 152783 0.73 0.32295
Target:  5'- gGGgCGggGccUGGGGCGGGGCcgcaGGCCGGg -3'
miRNA:   3'- gUCgGCaaC--ACUCCGCUCCG----CCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.