Results 1 - 20 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 3' | -57 | NC_004812.1 | + | 149608 | 1.08 | 0.002677 |
Target: 5'- cAGCGCGAGGGGAGGAGGAGAAACACAc -3' miRNA: 3'- -UCGCGCUCCCCUCCUCCUCUUUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 30366 | 0.8 | 0.206691 |
Target: 5'- cGCGCGcGGcGGGGGAGGGGAGGgGCGg -3' miRNA: 3'- uCGCGCuCC-CCUCCUCCUCUUUgUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 123469 | 0.79 | 0.217083 |
Target: 5'- -cUGCGGGGGGAGaGAgGGAGggGCGCGa -3' miRNA: 3'- ucGCGCUCCCCUC-CU-CCUCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 127903 | 0.65 | 0.885107 |
Target: 5'- cGGCGCGGGGcGGcggucgcgaaauccAGGAaGGGcacgcGAAGCGCGu -3' miRNA: 3'- -UCGCGCUCC-CC--------------UCCU-CCU-----CUUUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40548 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40606 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40686 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40744 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 29438 | 0.82 | 0.137079 |
Target: 5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3' miRNA: 3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 29264 | 0.8 | 0.190486 |
Target: 5'- uGCGCggggaGAGGGGAGGAGGGGGGaggagaggcgaggcGCGCAg -3' miRNA: 3'- uCGCG-----CUCCCCUCCUCCUCUU--------------UGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 38853 | 0.82 | 0.153019 |
Target: 5'- gGGCGCGuccGGGGGGGGccGAGAGACGCGg -3' miRNA: 3'- -UCGCGC---UCCCCUCCucCUCUUUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 1969 | 0.84 | 0.112299 |
Target: 5'- gGGCGcCGGGGGGAGGGGGGGAgggGugGCGg -3' miRNA: 3'- -UCGC-GCUCCCCUCCUCCUCU---UugUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 106753 | 0.87 | 0.069804 |
Target: 5'- gGGCGCGGGGGGGucGGAGGAGggGCGg- -3' miRNA: 3'- -UCGCGCUCCCCU--CCUCCUCuuUGUgu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 149400 | 0.82 | 0.156959 |
Target: 5'- aGGCgagGCGAGGGGAGGGGGAGGAGgGa- -3' miRNA: 3'- -UCG---CGCUCCCCUCCUCCUCUUUgUgu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 153456 | 0.87 | 0.071692 |
Target: 5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3' miRNA: 3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 30040 | 0.84 | 0.103557 |
Target: 5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3' miRNA: 3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 86782 | 0.81 | 0.165117 |
Target: 5'- gGGCGCGAGGGcgaccggggggaGAGGAGGAGGgcggcggcGACGCGg -3' miRNA: 3'- -UCGCGCUCCC------------CUCCUCCUCU--------UUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 35676 | 0.8 | 0.211833 |
Target: 5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3' miRNA: 3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40509 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 40646 | 0.87 | 0.07363 |
Target: 5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3' miRNA: 3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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