miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 3' -53.3 NC_004812.1 + 19154 0.66 0.967552
Target:  5'- -cGCggGgGGCGCGGCGgcggCGcccCCAGAa -3'
miRNA:   3'- caUGuaCgCCGCGUCGUa---GUu--GGUCU- -5'
21714 3' -53.3 NC_004812.1 + 60468 0.66 0.967552
Target:  5'- -aGCGgaagGCGGCGCGGUcgC--CCGGGu -3'
miRNA:   3'- caUGUa---CGCCGCGUCGuaGuuGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 146228 0.66 0.967552
Target:  5'- -gGCAUG-GGCGCcccagAGCAUaaaAACCAGc -3'
miRNA:   3'- caUGUACgCCGCG-----UCGUAg--UUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 47318 0.66 0.967552
Target:  5'- cGUACGUGCgGGCGC-GCAgguaGGCCu-- -3'
miRNA:   3'- -CAUGUACG-CCGCGuCGUag--UUGGucu -5'
21714 3' -53.3 NC_004812.1 + 99390 0.66 0.967552
Target:  5'- --cCGUGuCGGCGCuGCggCGGCUGGGg -3'
miRNA:   3'- cauGUAC-GCCGCGuCGuaGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 30826 0.66 0.967552
Target:  5'- -gGCAggGCGGCGCcaGGCGcCGcCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCG--UCGUaGUuGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 77363 0.66 0.967552
Target:  5'- -gGCccGCGGCGUcgcccAGCGacgcCAGCCAGGc -3'
miRNA:   3'- caUGuaCGCCGCG-----UCGUa---GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 66342 0.66 0.964248
Target:  5'- cUGCAgGCGGgGCAGCAgCcGCCGa- -3'
miRNA:   3'- cAUGUaCGCCgCGUCGUaGuUGGUcu -5'
21714 3' -53.3 NC_004812.1 + 97715 0.66 0.964248
Target:  5'- -----cGUGGCGC-GCGUCAACCu-- -3'
miRNA:   3'- cauguaCGCCGCGuCGUAGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 2514 0.66 0.964248
Target:  5'- --gUcgGCGGCGCGGcCGUCgAGCgCGGGc -3'
miRNA:   3'- cauGuaCGCCGCGUC-GUAG-UUG-GUCU- -5'
21714 3' -53.3 NC_004812.1 + 31104 0.66 0.964248
Target:  5'- -gGCAUuggGCGGCGgGGCGU---CCAGAa -3'
miRNA:   3'- caUGUA---CGCCGCgUCGUAguuGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 128022 0.66 0.964248
Target:  5'- --gUcgGCGGCGCGGcCGUCgAGCgCGGGc -3'
miRNA:   3'- cauGuaCGCCGCGUC-GUAG-UUG-GUCU- -5'
21714 3' -53.3 NC_004812.1 + 71068 0.66 0.960716
Target:  5'- -gGCGguucggGCGGCGCggGGCGUucggCGACCGGu -3'
miRNA:   3'- caUGUa-----CGCCGCG--UCGUA----GUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 130999 0.66 0.960716
Target:  5'- cUGCGUGgGGCGCGcCGaCGACgAGAa -3'
miRNA:   3'- cAUGUACgCCGCGUcGUaGUUGgUCU- -5'
21714 3' -53.3 NC_004812.1 + 141762 0.66 0.960716
Target:  5'- -gGCGgccGCGGgGCGGCGUCGAaCGGc -3'
miRNA:   3'- caUGUa--CGCCgCGUCGUAGUUgGUCu -5'
21714 3' -53.3 NC_004812.1 + 111554 0.66 0.960716
Target:  5'- cUGCAccaGCGGCGCuGCAuguUCGGCguGGu -3'
miRNA:   3'- cAUGUa--CGCCGCGuCGU---AGUUGguCU- -5'
21714 3' -53.3 NC_004812.1 + 59605 0.66 0.960716
Target:  5'- -cGCggGCGGCGCucGCG--AACCGGGg -3'
miRNA:   3'- caUGuaCGCCGCGu-CGUagUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 156467 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 57 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 30958 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.