miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 53625 0.66 0.999999
Target:  5'- uGGAGAGGG----CGGACGAgGAGAAGc -3'
miRNA:   3'- -CCUUUCCUuuggGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 90599 0.66 0.999999
Target:  5'- uGGuGGAGG-AACCCGG-CGGCGAu--- -3'
miRNA:   3'- -CC-UUUCCuUUGGGUCuGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 7463 0.66 0.999999
Target:  5'- cGggGGGAAACUCGccguuuCGGCGAGGGGg -3'
miRNA:   3'- cCuuUCCUUUGGGUcu----GCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 122310 0.66 0.999999
Target:  5'- cGggGGGAGGC--GGGCGGCGAGu-- -3'
miRNA:   3'- cCuuUCCUUUGggUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 156328 0.66 0.999999
Target:  5'- cGGGAGGggGCCgAGGgGGgGGGGGGg -3'
miRNA:   3'- cCUUUCCuuUGGgUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 117618 0.66 0.999999
Target:  5'- gGGAGGGGggGCggcgcgggccgCCGGgcGCGGCGGGGu- -3'
miRNA:   3'- -CCUUUCCuuUG-----------GGUC--UGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 41492 0.66 0.999999
Target:  5'- cGGGuuGGuuguucguggcaccGGCCCAGACGACcGAGu- -3'
miRNA:   3'- -CCUuuCCu-------------UUGGGUCUGCUGuUUUuu -5'
21715 5' -44.3 NC_004812.1 + 138002 0.66 0.999999
Target:  5'- gGGggGGGGAGCggGGGCGccccguauACAAAAGGg -3'
miRNA:   3'- -CCuuUCCUUUGggUCUGC--------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 142397 0.66 0.999999
Target:  5'- gGGAuaAAGGgcGCCCGGcccuggcGCGGCGAc--- -3'
miRNA:   3'- -CCU--UUCCuuUGGGUC-------UGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 54694 0.66 0.999999
Target:  5'- aGGAGGGcGAGGgCCAGGaggggGACGAGGGGg -3'
miRNA:   3'- -CCUUUC-CUUUgGGUCUg----CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 5732 0.66 0.999999
Target:  5'- cGGGAGGAGggcgccgggcgccGCCCAGGCccACAGGGAc -3'
miRNA:   3'- cCUUUCCUU-------------UGGGUCUGc-UGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 4859 0.66 0.999999
Target:  5'- gGGGAGGGGccgcGGCCCGcGCGAgAAAc-- -3'
miRNA:   3'- -CCUUUCCU----UUGGGUcUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 66701 0.66 0.999999
Target:  5'- aGGugcuGAGGGuguGCuCCAG-CGACAGGAGc -3'
miRNA:   3'- -CCu---UUCCUu--UG-GGUCuGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 45499 0.66 0.999999
Target:  5'- uGGGGAGGuugggcAGCCaCAGGCG-CGAGGGc -3'
miRNA:   3'- -CCUUUCCu-----UUGG-GUCUGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 155569 0.66 0.999999
Target:  5'- gGGGGAGGGGcgcGCgCGGGCGGCc----- -3'
miRNA:   3'- -CCUUUCCUU---UGgGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 115320 0.66 0.999999
Target:  5'- gGGAAAGGGAGuuUcguGGGCGGCGuuGGGg -3'
miRNA:   3'- -CCUUUCCUUUggG---UCUGCUGUuuUUU- -5'
21715 5' -44.3 NC_004812.1 + 83239 0.66 0.999999
Target:  5'- gGGAuGGGGGACaCCGGG-GGCGAGGc- -3'
miRNA:   3'- -CCUuUCCUUUG-GGUCUgCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 36633 0.66 0.999999
Target:  5'- cGGGAGGAGggcgccgggcgccGCCCAGGCccACAGGGAc -3'
miRNA:   3'- cCUUUCCUU-------------UGGGUCUGc-UGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 88720 0.66 0.999999
Target:  5'- gGGAGAGGcuGCgCCAGAgcaUGAUGAAGc- -3'
miRNA:   3'- -CCUUUCCuuUG-GGUCU---GCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 115540 0.66 0.999999
Target:  5'- cGGAGGGGggGCCUcgAGA-GACu----- -3'
miRNA:   3'- -CCUUUCCuuUGGG--UCUgCUGuuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.