miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 3' -58.5 NC_004812.1 + 78522 0.66 0.842889
Target:  5'- gACGUCAuccgcaccacGGACgacuuccacggggaGCUCGCGgaGCUCGAGc -3'
miRNA:   3'- -UGCAGU----------CCUGg-------------CGAGCGCg-UGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 37629 0.66 0.839714
Target:  5'- cGCGUCca-GCUGCUCGCgGCGCaUGAGg -3'
miRNA:   3'- -UGCAGuccUGGCGAGCG-CGUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 102895 0.66 0.839714
Target:  5'- uGCG-CGGGGCgGCggaccgGCGC-CUCGGGg -3'
miRNA:   3'- -UGCaGUCCUGgCGag----CGCGuGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 138677 0.66 0.839714
Target:  5'- gGCGagGGGugUggGUUCGCGUACcccuUCGAGg -3'
miRNA:   3'- -UGCagUCCugG--CGAGCGCGUG----AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 87018 0.66 0.839714
Target:  5'- cCG-CGGGccACCGC-CGuCGCGCUCGGa -3'
miRNA:   3'- uGCaGUCC--UGGCGaGC-GCGUGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 140492 0.66 0.838915
Target:  5'- uGCGUCgccAGGuCCGUguucgucUCGCGCaggcGCUCGAu -3'
miRNA:   3'- -UGCAG---UCCuGGCG-------AGCGCG----UGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 130756 0.66 0.838915
Target:  5'- cCGUCGGGGCgCGCcgagUCGgccgccgcggcccCGCGCUCGGc -3'
miRNA:   3'- uGCAGUCCUG-GCG----AGC-------------GCGUGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 5248 0.66 0.838915
Target:  5'- cCGUCGGGGCgCGCcgagUCGgccgccgcggcccCGCGCUCGGc -3'
miRNA:   3'- uGCAGUCCUG-GCG----AGC-------------GCGUGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 25089 0.66 0.83165
Target:  5'- gACGgggCGGcGCCGC-CGCGCGC-CGAc -3'
miRNA:   3'- -UGCa--GUCcUGGCGaGCGCGUGaGCUc -5'
21716 3' -58.5 NC_004812.1 + 150598 0.66 0.83165
Target:  5'- gACGgggCGGcGCCGC-CGCGCGC-CGAc -3'
miRNA:   3'- -UGCa--GUCcUGGCGaGCGCGUGaGCUc -5'
21716 3' -58.5 NC_004812.1 + 55880 0.66 0.83165
Target:  5'- uCGUCAGGugUGgUCGUaGCACgcgCGGa -3'
miRNA:   3'- uGCAGUCCugGCgAGCG-CGUGa--GCUc -5'
21716 3' -58.5 NC_004812.1 + 98320 0.66 0.83165
Target:  5'- cGCG-CGGGugCugGCUCGCGUACgcCGAc -3'
miRNA:   3'- -UGCaGUCCugG--CGAGCGCGUGa-GCUc -5'
21716 3' -58.5 NC_004812.1 + 35628 0.66 0.830834
Target:  5'- aACG-CGGGggaggguugacguGCCGCgggCGCGCGCgggggUCGGGg -3'
miRNA:   3'- -UGCaGUCC-------------UGGCGa--GCGCGUG-----AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 80304 0.66 0.823414
Target:  5'- gGCGgaCGGcGACCGCgcCGCGCuGCUgGAGg -3'
miRNA:   3'- -UGCa-GUC-CUGGCGa-GCGCG-UGAgCUC- -5'
21716 3' -58.5 NC_004812.1 + 44854 0.66 0.823414
Target:  5'- aACcUCAGG-CCGUagCGCGCGCgcaCGAGc -3'
miRNA:   3'- -UGcAGUCCuGGCGa-GCGCGUGa--GCUC- -5'
21716 3' -58.5 NC_004812.1 + 128562 0.66 0.823414
Target:  5'- cGCGgcgagCAGGaaggagagGCCGC-CGCGCGCgUCGGu -3'
miRNA:   3'- -UGCa----GUCC--------UGGCGaGCGCGUG-AGCUc -5'
21716 3' -58.5 NC_004812.1 + 3053 0.66 0.823414
Target:  5'- cGCGgcgagCAGGaaggagagGCCGC-CGCGCGCgUCGGu -3'
miRNA:   3'- -UGCa----GUCC--------UGGCGaGCGCGUG-AGCUc -5'
21716 3' -58.5 NC_004812.1 + 147874 0.66 0.815012
Target:  5'- -gGUCGGGGCCG-UCGagGCGUUCGGGg -3'
miRNA:   3'- ugCAGUCCUGGCgAGCg-CGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 81252 0.66 0.815012
Target:  5'- uGCGUCGGGG-CGCUCGaGCGCgUGGa -3'
miRNA:   3'- -UGCAGUCCUgGCGAGCgCGUGaGCUc -5'
21716 3' -58.5 NC_004812.1 + 60419 0.66 0.815012
Target:  5'- cGCGUCuGGAcCCGCUCcgGCGCGaccacCUCGc- -3'
miRNA:   3'- -UGCAGuCCU-GGCGAG--CGCGU-----GAGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.