miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 5' -55.4 NC_004812.1 + 95964 0.66 0.926066
Target:  5'- gCUCacgGUCGcGcgCCAGGGGCUGUaccucUGGa -3'
miRNA:   3'- -GAGa--CAGU-CuaGGUCCUCGACG-----ACCg -5'
21717 5' -55.4 NC_004812.1 + 79003 0.66 0.920527
Target:  5'- ---gGUCGGGggugcgCCGGGGGUUgggggucgGCUGGCu -3'
miRNA:   3'- gagaCAGUCUa-----GGUCCUCGA--------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 8391 0.66 0.920527
Target:  5'- ------gGGGUCCGGGGGCgcgGCgggGGCu -3'
miRNA:   3'- gagacagUCUAGGUCCUCGa--CGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 50253 0.66 0.920527
Target:  5'- ---gGUgAGGUCCAcccGGAGCUcGCcgGGCg -3'
miRNA:   3'- gagaCAgUCUAGGU---CCUCGA-CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 78996 0.66 0.920527
Target:  5'- -----aCAGcgCCaAGGcGCUGCUGGCc -3'
miRNA:   3'- gagacaGUCuaGG-UCCuCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 39292 0.66 0.920527
Target:  5'- ------gGGGUCCGGGGGCgcgGCgggGGCu -3'
miRNA:   3'- gagacagUCUAGGUCCUCGa--CGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 42805 0.66 0.914744
Target:  5'- -cCUGUCugccuucGA-CCGGGGGCUGgUGGg -3'
miRNA:   3'- gaGACAGu------CUaGGUCCUCGACgACCg -5'
21717 5' -55.4 NC_004812.1 + 134728 0.66 0.908718
Target:  5'- ---cGUCu--UCgGGGAGCUGgaGGCg -3'
miRNA:   3'- gagaCAGucuAGgUCCUCGACgaCCG- -5'
21717 5' -55.4 NC_004812.1 + 13720 0.66 0.895945
Target:  5'- ---gGUCGGGUCCAGGgucaggucGGCguagGCggGGCu -3'
miRNA:   3'- gagaCAGUCUAGGUCC--------UCGa---CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 98683 0.66 0.895945
Target:  5'- -gCUG-CAGAUUgAGGA-CUGgCUGGCg -3'
miRNA:   3'- gaGACaGUCUAGgUCCUcGAC-GACCG- -5'
21717 5' -55.4 NC_004812.1 + 23482 0.67 0.889205
Target:  5'- -gCUGgcgguGGUCgAGGGGCUGCUGucGCa -3'
miRNA:   3'- gaGACagu--CUAGgUCCUCGACGAC--CG- -5'
21717 5' -55.4 NC_004812.1 + 7905 0.67 0.889205
Target:  5'- gUCgcccgCAGGUgUCGGGGGCUGC-GGCg -3'
miRNA:   3'- gAGaca--GUCUA-GGUCCUCGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 15179 0.67 0.889205
Target:  5'- cCUCcGUCGGcgCCcagaggAGGAcGCUGC-GGCa -3'
miRNA:   3'- -GAGaCAGUCuaGG------UCCU-CGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 38806 0.67 0.889205
Target:  5'- gUCgcccgCAGGUgUCGGGGGCUGC-GGCg -3'
miRNA:   3'- gAGaca--GUCUA-GGUCCUCGACGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 92126 0.67 0.887829
Target:  5'- gCUCUGggGGAUgCGGGAGCggaucugcuuccGCaUGGCg -3'
miRNA:   3'- -GAGACagUCUAgGUCCUCGa-----------CG-ACCG- -5'
21717 5' -55.4 NC_004812.1 + 17139 0.67 0.882232
Target:  5'- cCUCUgccgcgGUCGGG-CCGGGGGgaGUcgUGGCg -3'
miRNA:   3'- -GAGA------CAGUCUaGGUCCUCgaCG--ACCG- -5'
21717 5' -55.4 NC_004812.1 + 101196 0.67 0.882232
Target:  5'- gUCUG-CGGggCCAGGGGCcccGC-GGCc -3'
miRNA:   3'- gAGACaGUCuaGGUCCUCGa--CGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 48257 0.67 0.882232
Target:  5'- -cCUGgacCGGGUCaCGGGGGC-GCUGGa -3'
miRNA:   3'- gaGACa--GUCUAG-GUCCUCGaCGACCg -5'
21717 5' -55.4 NC_004812.1 + 96867 0.67 0.882232
Target:  5'- aUC-GUCGGccgCCAGGAGCuggacgUGCUGcGCu -3'
miRNA:   3'- gAGaCAGUCua-GGUCCUCG------ACGAC-CG- -5'
21717 5' -55.4 NC_004812.1 + 129011 0.67 0.875033
Target:  5'- uUCgg-CGGGUCCGGGGGCUaC-GGCg -3'
miRNA:   3'- gAGacaGUCUAGGUCCUCGAcGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.