miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 5' -55.4 NC_004812.1 + 110657 0.66 0.919661
Target:  5'- uGCUGCAcagCCugGGCGGGGacuaUAUCAg -3'
miRNA:   3'- cUGAUGUa--GGugCCGCUCCc---GUAGUa -5'
21718 5' -55.4 NC_004812.1 + 102623 0.66 0.91381
Target:  5'- cGCUACGgcaCCACGGUGAacuGCAUCGUc -3'
miRNA:   3'- cUGAUGUa--GGUGCCGCUcc-CGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 155125 0.66 0.91381
Target:  5'- cGACgguugGC-UCCGCGGCGgcggGGGGCcggGUCGa -3'
miRNA:   3'- -CUGa----UGuAGGUGCCGC----UCCCG---UAGUa -5'
21718 5' -55.4 NC_004812.1 + 124224 0.66 0.91381
Target:  5'- cGACgguugGC-UCCGCGGCGgcggGGGGCcggGUCGa -3'
miRNA:   3'- -CUGa----UGuAGGUGCCGC----UCCCG---UAGUa -5'
21718 5' -55.4 NC_004812.1 + 148919 0.66 0.907715
Target:  5'- cGACggGCGUCCgGCGGCGucGGCGaCGa -3'
miRNA:   3'- -CUGa-UGUAGG-UGCCGCucCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 23411 0.66 0.907715
Target:  5'- cGACggGCGUCCgGCGGCGucGGCGaCGa -3'
miRNA:   3'- -CUGa-UGUAGG-UGCCGCucCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 100435 0.66 0.901376
Target:  5'- cGC-ACGUCCGCccagaacuGCGAGGGCGUgGUg -3'
miRNA:   3'- cUGaUGUAGGUGc-------CGCUCCCGUAgUA- -5'
21718 5' -55.4 NC_004812.1 + 136182 0.66 0.901376
Target:  5'- cGCggACGUCCGgGGC-AGGGCcgCGUg -3'
miRNA:   3'- cUGa-UGUAGGUgCCGcUCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 6037 0.66 0.894797
Target:  5'- cGACUGCGcgCCguaggGCGGCGAGGGgAa--- -3'
miRNA:   3'- -CUGAUGUa-GG-----UGCCGCUCCCgUagua -5'
21718 5' -55.4 NC_004812.1 + 36938 0.66 0.894797
Target:  5'- cGACUGCGcgCCguaggGCGGCGAGGGgAa--- -3'
miRNA:   3'- -CUGAUGUa-GG-----UGCCGCUCCCgUagua -5'
21718 5' -55.4 NC_004812.1 + 106502 0.66 0.887981
Target:  5'- gGGCgcGgGUCCGCGGCGcGGGGCGcCGg -3'
miRNA:   3'- -CUGa-UgUAGGUGCCGC-UCCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 67826 0.66 0.887981
Target:  5'- cGAuCUGCG-CCGaGGCGAcgguGGGCAUCAg -3'
miRNA:   3'- -CU-GAUGUaGGUgCCGCU----CCCGUAGUa -5'
21718 5' -55.4 NC_004812.1 + 135064 0.67 0.880933
Target:  5'- cGugUACAUggaCGgGGCGGGGGCGcgcUCGg -3'
miRNA:   3'- -CugAUGUAg--GUgCCGCUCCCGU---AGUa -5'
21718 5' -55.4 NC_004812.1 + 107192 0.67 0.880933
Target:  5'- cGACgcgGCGgcccggggCCACGGCGcgggccgccuGGGCGUCGa -3'
miRNA:   3'- -CUGa--UGUa-------GGUGCCGCu---------CCCGUAGUa -5'
21718 5' -55.4 NC_004812.1 + 135350 0.67 0.880933
Target:  5'- aACUGCGUCCGCGcGCGcuucuGGGGCc---- -3'
miRNA:   3'- cUGAUGUAGGUGC-CGC-----UCCCGuagua -5'
21718 5' -55.4 NC_004812.1 + 26722 0.67 0.873655
Target:  5'- aGGC-GCGUCgCACGGCGGgccguGGGCGUUg- -3'
miRNA:   3'- -CUGaUGUAG-GUGCCGCU-----CCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 25112 0.67 0.873655
Target:  5'- cGACgcGCGuUCCGgGGCGuGGGCcgCAUa -3'
miRNA:   3'- -CUGa-UGU-AGGUgCCGCuCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 150621 0.67 0.873655
Target:  5'- cGACgcGCGuUCCGgGGCGuGGGCcgCAUa -3'
miRNA:   3'- -CUGa-UGU-AGGUgCCGCuCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 150381 0.67 0.866155
Target:  5'- cGGCcGCGgggCCGCGGCGgcaGGGGCggCGUc -3'
miRNA:   3'- -CUGaUGUa--GGUGCCGC---UCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 56936 0.67 0.866155
Target:  5'- aGGCggggGCGUCUAgCGGCGcccucuaccGGGGCAUCc- -3'
miRNA:   3'- -CUGa---UGUAGGU-GCCGC---------UCCCGUAGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.