miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 3' -61.8 NC_004812.1 + 49182 0.66 0.686862
Target:  5'- -cGGccgCCgcgcGGCCGGuGGGCCUGgcCGCa -3'
miRNA:   3'- cuCCa--GGa---CCGGCC-CCUGGGCauGUG- -5'
21719 3' -61.8 NC_004812.1 + 123506 0.66 0.686862
Target:  5'- gGGGGUCUggGGUCGGGcGCCgGgaGCGCg -3'
miRNA:   3'- -CUCCAGGa-CCGGCCCcUGGgCa-UGUG- -5'
21719 3' -61.8 NC_004812.1 + 145965 0.66 0.686862
Target:  5'- cGGGGcacCCUcgGGCUGGGGGCCgugcUGUGCGg -3'
miRNA:   3'- -CUCCa--GGA--CCGGCCCCUGG----GCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 98181 0.66 0.686862
Target:  5'- -cGGcgaUCCUGGCCGGGu-CCCGc-CGCc -3'
miRNA:   3'- cuCC---AGGACCGGCCCcuGGGCauGUG- -5'
21719 3' -61.8 NC_004812.1 + 48482 0.66 0.686862
Target:  5'- -cGG-CCgcgcGGCCGGGGGCUCGaccgGCGu -3'
miRNA:   3'- cuCCaGGa---CCGGCCCCUGGGCa---UGUg -5'
21719 3' -61.8 NC_004812.1 + 27901 0.66 0.686862
Target:  5'- cGGGGcgagCCcGGUCGGGGAgaCCGgGCGCc -3'
miRNA:   3'- -CUCCa---GGaCCGGCCCCUg-GGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 70097 0.66 0.685889
Target:  5'- -cGGUCCcaccGGCCgcuucccGGGGGCCCGca-GCg -3'
miRNA:   3'- cuCCAGGa---CCGG-------CCCCUGGGCaugUG- -5'
21719 3' -61.8 NC_004812.1 + 5600 0.66 0.681019
Target:  5'- cGGGGUCCUgcgaGGCCGcgucguaguagaaccGGGGCCgCG-GCAUg -3'
miRNA:   3'- -CUCCAGGA----CCGGC---------------CCCUGG-GCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 131108 0.66 0.681019
Target:  5'- cGGGGUCCUgcgaGGCCGcgucguaguagaaccGGGGCCgCG-GCAUg -3'
miRNA:   3'- -CUCCAGGA----CCGGC---------------CCCUGG-GCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 95981 0.66 0.677117
Target:  5'- aGGGGcuguaccUCUGGauCCGGGGGCCCGccgaGCGCc -3'
miRNA:   3'- -CUCCa------GGACC--GGCCCCUGGGCa---UGUG- -5'
21719 3' -61.8 NC_004812.1 + 79004 0.66 0.677117
Target:  5'- aAGGcgcUgCUGGCCGGGGacGCCCGcgacCGCc -3'
miRNA:   3'- cUCC---AgGACCGGCCCC--UGGGCau--GUG- -5'
21719 3' -61.8 NC_004812.1 + 80702 0.66 0.675164
Target:  5'- gGGGGUCC-GGcCCGGGGAagggacgaaacgCCGagGCGCg -3'
miRNA:   3'- -CUCCAGGaCC-GGCCCCUg-----------GGCa-UGUG- -5'
21719 3' -61.8 NC_004812.1 + 6148 0.66 0.667338
Target:  5'- cGAGGggaagggGGUCGGGGGCCUGgGCGg -3'
miRNA:   3'- -CUCCagga---CCGGCCCCUGGGCaUGUg -5'
21719 3' -61.8 NC_004812.1 + 37049 0.66 0.667338
Target:  5'- cGAGGggaagggGGUCGGGGGCCUGgGCGg -3'
miRNA:   3'- -CUCCagga---CCGGCCCCUGGGCaUGUg -5'
21719 3' -61.8 NC_004812.1 + 101188 0.66 0.667338
Target:  5'- cGGGUCCggucugcggGGCCaGGGGCCC---CGCg -3'
miRNA:   3'- cUCCAGGa--------CCGGcCCCUGGGcauGUG- -5'
21719 3' -61.8 NC_004812.1 + 21157 0.66 0.667338
Target:  5'- gGGGGUCUcggcGuGCCGcGGGACgCCGagGCGCg -3'
miRNA:   3'- -CUCCAGGa---C-CGGC-CCCUG-GGCa-UGUG- -5'
21719 3' -61.8 NC_004812.1 + 90432 0.66 0.657533
Target:  5'- cAGGaccUgCUGGCCGGGGugcucgcccaGCCCGagcuguucuucgUGCACa -3'
miRNA:   3'- cUCC---AgGACCGGCCCC----------UGGGC------------AUGUG- -5'
21719 3' -61.8 NC_004812.1 + 137842 0.66 0.657533
Target:  5'- gGAGGUCCUGGCgcUGGcgacGGACgagGUGCGCc -3'
miRNA:   3'- -CUCCAGGACCG--GCC----CCUGgg-CAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 98519 0.66 0.657533
Target:  5'- --uGUCCgcgGGCCGGGuuCgUGUGCGCg -3'
miRNA:   3'- cucCAGGa--CCGGCCCcuGgGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 16751 0.66 0.657533
Target:  5'- cAGGgcgCCccgggGGCCGcGGGCCCGaagACGCg -3'
miRNA:   3'- cUCCa--GGa----CCGGCcCCUGGGCa--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.