miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 5' -56.9 NC_004812.1 + 106248 0.66 0.893906
Target:  5'- cGGCGUcgGGGGCGCCcuaccgcguGGCCcucGGUc- -3'
miRNA:   3'- cCUGUAuaCCUCGCGG---------CCGGa--CCAcu -5'
21719 5' -56.9 NC_004812.1 + 124721 0.66 0.88723
Target:  5'- cGACcgcggGUGGgaGGCGCUGGCCgGGggGAc -3'
miRNA:   3'- cCUGua---UACC--UCGCGGCCGGaCCa-CU- -5'
21719 5' -56.9 NC_004812.1 + 98618 0.66 0.88723
Target:  5'- gGGGCGUcgGUGGccAGCGCCguguucguGGCCgccGUGAa -3'
miRNA:   3'- -CCUGUA--UACC--UCGCGG--------CCGGac-CACU- -5'
21719 5' -56.9 NC_004812.1 + 90892 0.66 0.88723
Target:  5'- gGGACGgucacGAGCuCCGGCggGGUGAg -3'
miRNA:   3'- -CCUGUauac-CUCGcGGCCGgaCCACU- -5'
21719 5' -56.9 NC_004812.1 + 77240 0.66 0.880334
Target:  5'- cGGGgGUGUGGGGCGCUGcCCUcgcGGg-- -3'
miRNA:   3'- -CCUgUAUACCUCGCGGCcGGA---CCacu -5'
21719 5' -56.9 NC_004812.1 + 79334 0.66 0.880334
Target:  5'- cGGACGgugcggcGGAGCuCgGGCCUGGccGAg -3'
miRNA:   3'- -CCUGUaua----CCUCGcGgCCGGACCa-CU- -5'
21719 5' -56.9 NC_004812.1 + 83204 0.66 0.880334
Target:  5'- cGGGCGUcGUGaGgccGGCGCCGGgCUGGc-- -3'
miRNA:   3'- -CCUGUA-UAC-C---UCGCGGCCgGACCacu -5'
21719 5' -56.9 NC_004812.1 + 95261 0.66 0.877514
Target:  5'- gGGACGgguauaaauggGGGGUGUgGGCCgcGGUGGc -3'
miRNA:   3'- -CCUGUaua--------CCUCGCGgCCGGa-CCACU- -5'
21719 5' -56.9 NC_004812.1 + 46045 0.66 0.87322
Target:  5'- cGACccg-GGGGuCGCCGGCagGGUGGg -3'
miRNA:   3'- cCUGuauaCCUC-GCGGCCGgaCCACU- -5'
21719 5' -56.9 NC_004812.1 + 10898 0.66 0.865894
Target:  5'- cGGGCGUccGucAGCGCCGGUgUGGcgGAu -3'
miRNA:   3'- -CCUGUAuaCc-UCGCGGCCGgACCa-CU- -5'
21719 5' -56.9 NC_004812.1 + 145281 0.66 0.862906
Target:  5'- cGGGCAUcgGGGGggugugcggugugGCgGGCCcGGUGGg -3'
miRNA:   3'- -CCUGUAuaCCUCg------------CGgCCGGaCCACU- -5'
21719 5' -56.9 NC_004812.1 + 23414 0.67 0.850628
Target:  5'- cGGGCGUccGGcGGCGUCGGCgacgacGGUGGu -3'
miRNA:   3'- -CCUGUAuaCC-UCGCGGCCGga----CCACU- -5'
21719 5' -56.9 NC_004812.1 + 148922 0.67 0.850628
Target:  5'- cGGGCGUccGGcGGCGUCGGCgacgacGGUGGu -3'
miRNA:   3'- -CCUGUAuaCC-UCGCGGCCGga----CCACU- -5'
21719 5' -56.9 NC_004812.1 + 122777 0.67 0.850628
Target:  5'- cGGaACAccccgggGUGGAGgGCCaGGaCCUGcGUGAg -3'
miRNA:   3'- -CC-UGUa------UACCUCgCGG-CC-GGAC-CACU- -5'
21719 5' -56.9 NC_004812.1 + 71861 0.67 0.842701
Target:  5'- cGGGgG-AUGGGG-GUCGGCCagguUGGUGAg -3'
miRNA:   3'- -CCUgUaUACCUCgCGGCCGG----ACCACU- -5'
21719 5' -56.9 NC_004812.1 + 48259 0.67 0.834585
Target:  5'- uGGACcgGgucacgGGGGCGCUGGaggcCCUGGaGAc -3'
miRNA:   3'- -CCUGuaUa-----CCUCGCGGCC----GGACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 38170 0.67 0.834585
Target:  5'- aGACGgggagGGGGCGgCGGCCgcguGUGAg -3'
miRNA:   3'- cCUGUaua--CCUCGCgGCCGGac--CACU- -5'
21719 5' -56.9 NC_004812.1 + 134529 0.67 0.834585
Target:  5'- cGGGCAUGUGGAGCcaCauGCUgcaGGUGGg -3'
miRNA:   3'- -CCUGUAUACCUCGc-GgcCGGa--CCACU- -5'
21719 5' -56.9 NC_004812.1 + 153662 0.67 0.834585
Target:  5'- aGGGCGcgcacGGuGCGCCcGCCgagGGUGAc -3'
miRNA:   3'- -CCUGUaua--CCuCGCGGcCGGa--CCACU- -5'
21719 5' -56.9 NC_004812.1 + 122760 0.67 0.834585
Target:  5'- aGGGCGcgcacGGuGCGCCcGCCgagGGUGAc -3'
miRNA:   3'- -CCUGUaua--CCuCGCGGcCGGa--CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.