miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 3' -54 NC_004812.1 + 139565 0.66 0.955976
Target:  5'- uACGCGuCGGAUgCgaugaGCGCGUCGUCgGg -3'
miRNA:   3'- cUGUGC-GUCUAgGa----CGCGUAGUAGgU- -5'
21720 3' -54 NC_004812.1 + 26572 0.66 0.955976
Target:  5'- uGGC-UGCAGAaCCcGCGCGUCAccgCCGg -3'
miRNA:   3'- -CUGuGCGUCUaGGaCGCGUAGUa--GGU- -5'
21720 3' -54 NC_004812.1 + 152080 0.66 0.955976
Target:  5'- uGGC-UGCAGAaCCcGCGCGUCAccgCCGg -3'
miRNA:   3'- -CUGuGCGUCUaGGaCGCGUAGUa--GGU- -5'
21720 3' -54 NC_004812.1 + 33821 0.66 0.955976
Target:  5'- -uCACGCAGGUCCUG-GCcc--UCCAc -3'
miRNA:   3'- cuGUGCGUCUAGGACgCGuaguAGGU- -5'
21720 3' -54 NC_004812.1 + 112009 0.66 0.955584
Target:  5'- gGGCugGCGGGgaUCUGCGgucgcugcugcucCAUCAUCCu -3'
miRNA:   3'- -CUGugCGUCUa-GGACGC-------------GUAGUAGGu -5'
21720 3' -54 NC_004812.1 + 3639 0.66 0.951945
Target:  5'- gGGCGCGCGGcgCCgccCGCGUCugcgucggCCAg -3'
miRNA:   3'- -CUGUGCGUCuaGGac-GCGUAGua------GGU- -5'
21720 3' -54 NC_004812.1 + 129147 0.66 0.951945
Target:  5'- gGGCGCGCGGcgCCgccCGCGUCugcgucggCCAg -3'
miRNA:   3'- -CUGUGCGUCuaGGac-GCGUAGua------GGU- -5'
21720 3' -54 NC_004812.1 + 34662 0.66 0.951945
Target:  5'- cGGCGC-CAGggCCaGCGCGUCccCCAg -3'
miRNA:   3'- -CUGUGcGUCuaGGaCGCGUAGuaGGU- -5'
21720 3' -54 NC_004812.1 + 15962 0.66 0.951945
Target:  5'- cGGCGCGUGGcgCCgccGCGCGgcggcgCGUCUAc -3'
miRNA:   3'- -CUGUGCGUCuaGGa--CGCGUa-----GUAGGU- -5'
21720 3' -54 NC_004812.1 + 112576 0.66 0.951945
Target:  5'- cGACGCGCAGGUgacGCGCggCcgCCGg -3'
miRNA:   3'- -CUGUGCGUCUAggaCGCGuaGuaGGU- -5'
21720 3' -54 NC_004812.1 + 143396 0.66 0.947232
Target:  5'- gGAuCGCGCAGAUcgccaucCCggcGUGCAUCAUCg- -3'
miRNA:   3'- -CU-GUGCGUCUA-------GGa--CGCGUAGUAGgu -5'
21720 3' -54 NC_004812.1 + 42583 0.66 0.943157
Target:  5'- cGACGCGCgcgccgacggcgAGAccgUgCUGCGCAUCGUagCCGc -3'
miRNA:   3'- -CUGUGCG------------UCU---AgGACGCGUAGUA--GGU- -5'
21720 3' -54 NC_004812.1 + 125020 0.66 0.943157
Target:  5'- cGGCGCGCGGcccGUCCU-CGCGcCGUUCGa -3'
miRNA:   3'- -CUGUGCGUC---UAGGAcGCGUaGUAGGU- -5'
21720 3' -54 NC_004812.1 + 140259 0.66 0.938395
Target:  5'- aGAgGCGCuccAGGUCCUGCGCGUa----- -3'
miRNA:   3'- -CUgUGCG---UCUAGGACGCGUAguaggu -5'
21720 3' -54 NC_004812.1 + 64738 0.66 0.938395
Target:  5'- uGCGCGCccccGggCCguacucgaUGCGCAUCAUCUAc -3'
miRNA:   3'- cUGUGCGu---CuaGG--------ACGCGUAGUAGGU- -5'
21720 3' -54 NC_004812.1 + 141799 0.67 0.933385
Target:  5'- uACACGCu--UCCgcUGCGCAUCcUCCc -3'
miRNA:   3'- cUGUGCGucuAGG--ACGCGUAGuAGGu -5'
21720 3' -54 NC_004812.1 + 38792 0.67 0.933385
Target:  5'- cACGCGCGuGGUCUgcgggGCGCucucgagcUCGUCCAg -3'
miRNA:   3'- cUGUGCGU-CUAGGa----CGCGu-------AGUAGGU- -5'
21720 3' -54 NC_004812.1 + 114382 0.67 0.933385
Target:  5'- cGACGCGCGcGGUCCUccucGgGCGUCAgguagUCAa -3'
miRNA:   3'- -CUGUGCGU-CUAGGA----CgCGUAGUa----GGU- -5'
21720 3' -54 NC_004812.1 + 94256 0.67 0.933385
Target:  5'- cGACGCGCAucUCCgGCGgGgCGUCCu -3'
miRNA:   3'- -CUGUGCGUcuAGGaCGCgUaGUAGGu -5'
21720 3' -54 NC_004812.1 + 128649 0.67 0.933385
Target:  5'- cGGCGCGUAGAgcaCCagcacGCGCA-CGUCCu -3'
miRNA:   3'- -CUGUGCGUCUa--GGa----CGCGUaGUAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.