miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 23635 0.66 0.906578
Target:  5'- cCGCCGGGGCg---CGCGGUCCccGCg- -3'
miRNA:   3'- -GUGGCCUUGgacaGCGCCAGGa-UGag -5'
21721 5' -56.6 NC_004812.1 + 139744 0.66 0.906578
Target:  5'- aCGCCG--ACCagGUCGCGGUCCcccGCg- -3'
miRNA:   3'- -GUGGCcuUGGa-CAGCGCCAGGa--UGag -5'
21721 5' -56.6 NC_004812.1 + 71994 0.66 0.906578
Target:  5'- -cCCGGGGCUggggCGCGGUCgU-CUCg -3'
miRNA:   3'- guGGCCUUGGaca-GCGCCAGgAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 149143 0.66 0.906578
Target:  5'- cCGCCGGGGCg---CGCGGUCCccGCg- -3'
miRNA:   3'- -GUGGCCUUGgacaGCGCCAGGa-UGag -5'
21721 5' -56.6 NC_004812.1 + 9119 0.66 0.900356
Target:  5'- cCACCGGAcccccgcggcGCCacgGUCGC---CCUGCUCu -3'
miRNA:   3'- -GUGGCCU----------UGGa--CAGCGccaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 75449 0.66 0.900356
Target:  5'- gGCCGGGucGCCgcgGagGCGGacggUCUGCUCc -3'
miRNA:   3'- gUGGCCU--UGGa--CagCGCCa---GGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 118648 0.66 0.893906
Target:  5'- gCGCCuGGAGcggcCCUGgCGCGGUCC-ACa- -3'
miRNA:   3'- -GUGG-CCUU----GGACaGCGCCAGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 149549 0.66 0.893906
Target:  5'- gCGCCuGGAGcggcCCUGgCGCGGUCC-ACa- -3'
miRNA:   3'- -GUGG-CCUU----GGACaGCGCCAGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 116192 0.66 0.891927
Target:  5'- gCGCCGuGGcgggcuacuacgcgGCCUGgcucgcgcggGCGGUCCUGCUUu -3'
miRNA:   3'- -GUGGC-CU--------------UGGACag--------CGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 39280 0.66 0.887908
Target:  5'- cCGCCGGGGCC---CGgGGUCCgggggcgcggcggggGCUCg -3'
miRNA:   3'- -GUGGCCUUGGacaGCgCCAGGa--------------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 8379 0.66 0.887908
Target:  5'- cCGCCGGGGCC---CGgGGUCCgggggcgcggcggggGCUCg -3'
miRNA:   3'- -GUGGCCUUGGacaGCgCCAGGa--------------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 86018 0.66 0.88723
Target:  5'- uGCCGGGGCgUGg-GCGGUCaggaaCUGCUa -3'
miRNA:   3'- gUGGCCUUGgACagCGCCAG-----GAUGAg -5'
21721 5' -56.6 NC_004812.1 + 35823 0.66 0.88723
Target:  5'- gGCUGGGcgucGCC-GUCGCGGUaCUUGCg- -3'
miRNA:   3'- gUGGCCU----UGGaCAGCGCCA-GGAUGag -5'
21721 5' -56.6 NC_004812.1 + 113453 0.66 0.88723
Target:  5'- -cCCGGGccGCCgcggUGUCGCGGacCCUGCg- -3'
miRNA:   3'- guGGCCU--UGG----ACAGCGCCa-GGAUGag -5'
21721 5' -56.6 NC_004812.1 + 140461 0.66 0.88723
Target:  5'- gCGCCGGAGCUcgaUGUCcCGGUCgcgcagCUGCgUCg -3'
miRNA:   3'- -GUGGCCUUGG---ACAGcGCCAG------GAUG-AG- -5'
21721 5' -56.6 NC_004812.1 + 48753 0.66 0.88723
Target:  5'- -cCCGGcuCCU-UCGCGGgCCUGCUg -3'
miRNA:   3'- guGGCCuuGGAcAGCGCCaGGAUGAg -5'
21721 5' -56.6 NC_004812.1 + 99699 0.66 0.88723
Target:  5'- cCGCCaGGGACUcgGUCGCGG-CCgcgGCg- -3'
miRNA:   3'- -GUGG-CCUUGGa-CAGCGCCaGGa--UGag -5'
21721 5' -56.6 NC_004812.1 + 111196 0.66 0.885184
Target:  5'- cCACCGcGccCCUGcUucggugggcgacacCGCGGUCCUGCUUc -3'
miRNA:   3'- -GUGGC-CuuGGAC-A--------------GCGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 96722 0.66 0.880334
Target:  5'- uGCCGGGccacgaggGCCggGcCGCGGcCCcGCUCg -3'
miRNA:   3'- gUGGCCU--------UGGa-CaGCGCCaGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 85860 0.66 0.880334
Target:  5'- gACCGG-GCgaGUgGCGGgUCUGCUCc -3'
miRNA:   3'- gUGGCCuUGgaCAgCGCCaGGAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.