miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 3' -56.8 NC_004812.1 + 147568 0.66 0.911521
Target:  5'- --gCCgGCGCG-GCCGCGuacggcAUGGCUCGg -3'
miRNA:   3'- ugaGGgUGUGCaUGGUGC------UGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 105896 0.66 0.911521
Target:  5'- uCUCCCGuggGCGaACgGCGgcGCGGCUCGc -3'
miRNA:   3'- uGAGGGUg--UGCaUGgUGC--UGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 141187 0.66 0.911521
Target:  5'- aGCUCCCGgAg--GCCcgggGCGGCGcGCUCGa -3'
miRNA:   3'- -UGAGGGUgUgcaUGG----UGCUGC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 139540 0.66 0.911521
Target:  5'- aGCgCCacgggggGCGCGU-CCGCGGCGGC-CGg -3'
miRNA:   3'- -UGaGGg------UGUGCAuGGUGCUGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 151523 0.66 0.911521
Target:  5'- gACgaugCCgACGCGgACgGCGACGGCg-- -3'
miRNA:   3'- -UGa---GGgUGUGCaUGgUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 59957 0.66 0.911521
Target:  5'- uGCUggCCCACGgGgucgcGCgGCGcCGGCUCGu -3'
miRNA:   3'- -UGA--GGGUGUgCa----UGgUGCuGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 136946 0.66 0.911521
Target:  5'- -gUCCC-CGCGgcCCcCGGCGGuCUCa -3'
miRNA:   3'- ugAGGGuGUGCauGGuGCUGCC-GAGc -5'
21722 3' -56.8 NC_004812.1 + 26014 0.66 0.911521
Target:  5'- gACgaugCCgACGCGgACgGCGACGGCg-- -3'
miRNA:   3'- -UGa---GGgUGUGCaUGgUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 4193 0.66 0.910933
Target:  5'- uAC-CCgGCgggaacgGCGgggACCGCGGCGGCgUCGg -3'
miRNA:   3'- -UGaGGgUG-------UGCa--UGGUGCUGCCG-AGC- -5'
21722 3' -56.8 NC_004812.1 + 129702 0.66 0.910933
Target:  5'- uAC-CCgGCgggaacgGCGgggACCGCGGCGGCgUCGg -3'
miRNA:   3'- -UGaGGgUG-------UGCa--UGGUGCUGCCG-AGC- -5'
21722 3' -56.8 NC_004812.1 + 14748 0.66 0.910933
Target:  5'- gGCUCCCGCGgcugcucCGgggGCgACGACacGCUCGc -3'
miRNA:   3'- -UGAGGGUGU-------GCa--UGgUGCUGc-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 112426 0.66 0.905535
Target:  5'- aGC-CCCACcCccGCCGCaGAcCGGCUCGg -3'
miRNA:   3'- -UGaGGGUGuGcaUGGUG-CU-GCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 18882 0.66 0.905535
Target:  5'- gGCggCCCGCGgGUcGCCGCGGaggcCGaGCUCGu -3'
miRNA:   3'- -UGa-GGGUGUgCA-UGGUGCU----GC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 69996 0.66 0.905535
Target:  5'- --aCCCGCugGgcaACCGCGccGCGGCcCGc -3'
miRNA:   3'- ugaGGGUGugCa--UGGUGC--UGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 117925 0.66 0.905535
Target:  5'- cGCggCCUACACG-GCCGCGccgcACGGCgCGc -3'
miRNA:   3'- -UGa-GGGUGUGCaUGGUGC----UGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 148826 0.66 0.905535
Target:  5'- cGCggCCUACACG-GCCGCGccgcACGGCgCGc -3'
miRNA:   3'- -UGa-GGGUGUGCaUGGUGC----UGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 12347 0.66 0.903078
Target:  5'- aACUCCCACaccaccuugGCGgggggcgcgcccgGCCGCG-CGGC-CGg -3'
miRNA:   3'- -UGAGGGUG---------UGCa------------UGGUGCuGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 13649 0.66 0.901835
Target:  5'- --aCCCACACGcggaggacguagaaGCCgACGACGGCguuagCGg -3'
miRNA:   3'- ugaGGGUGUGCa-------------UGG-UGCUGCCGa----GC- -5'
21722 3' -56.8 NC_004812.1 + 115908 0.66 0.899323
Target:  5'- gAUUCCC-CugGgggACCGCG--GGCUCGu -3'
miRNA:   3'- -UGAGGGuGugCa--UGGUGCugCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 97403 0.66 0.899323
Target:  5'- cGCgggCCUcggGCGCGUACUggugggucgacgGCGACGGCaUCa -3'
miRNA:   3'- -UGa--GGG---UGUGCAUGG------------UGCUGCCG-AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.