miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 71941 0.65 0.711284
Target:  5'- aGGACGgCGCgggGCG-GcCCugccgcgacgcgcgCCGCGGGAg -3'
miRNA:   3'- -CCUGCgGCGa--CGCaCaGG--------------GGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 13446 0.66 0.705556
Target:  5'- gGGACGCCGUggucucgggggugggGgGUGgCgUCGCGGGGa -3'
miRNA:   3'- -CCUGCGGCGa--------------CgCACaGgGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 1815 0.66 0.7046
Target:  5'- cGGACGUCGggGCcg--CCCCGuCGGGGg -3'
miRNA:   3'- -CCUGCGGCgaCGcacaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 32716 0.66 0.7046
Target:  5'- cGGACGUCGggGCcg--CCCCGuCGGGGg -3'
miRNA:   3'- -CCUGCGGCgaCGcacaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 17073 0.66 0.7046
Target:  5'- cGGACGCgcccccCGUgGCGcUGUCCCCGCc--- -3'
miRNA:   3'- -CCUGCG------GCGaCGC-ACAGGGGCGuccu -5'
21723 3' -61.7 NC_004812.1 + 16911 0.66 0.7046
Target:  5'- aGGCGCUGCUGCGcaUGg-CCUGCgAGGu -3'
miRNA:   3'- cCUGCGGCGACGC--ACagGGGCG-UCCu -5'
21723 3' -61.7 NC_004812.1 + 102109 0.66 0.7046
Target:  5'- cGGccACGCgaCGCUGCGggagaaCCUGCGGGAc -3'
miRNA:   3'- -CC--UGCG--GCGACGCacag--GGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 29133 0.66 0.7046
Target:  5'- cGACGUCGCgacgcacggGCG-GUCCCa-CGGGAc -3'
miRNA:   3'- cCUGCGGCGa--------CGCaCAGGGgcGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 65142 0.66 0.7046
Target:  5'- uGGACGCCuucggGCGcGUCCUCGU-GGAc -3'
miRNA:   3'- -CCUGCGGcga--CGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 141985 0.66 0.703642
Target:  5'- uGGAgGCCGC-GCGgGUgCCCCGgcugcagugguucCGGGAc -3'
miRNA:   3'- -CCUgCGGCGaCGCaCA-GGGGC-------------GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 151261 0.66 0.703642
Target:  5'- cGACGCCGCcGCGc--CCCCGCcgaccccGGGc -3'
miRNA:   3'- cCUGCGGCGaCGCacaGGGGCG-------UCCu -5'
21723 3' -61.7 NC_004812.1 + 25753 0.66 0.703642
Target:  5'- cGACGCCGCcGCGc--CCCCGCcgaccccGGGc -3'
miRNA:   3'- cCUGCGGCGaCGCacaGGGGCG-------UCCu -5'
21723 3' -61.7 NC_004812.1 + 153412 0.66 0.695004
Target:  5'- cGGGC-CCGCUGCGccgcgCCgCCGCcuGGAu -3'
miRNA:   3'- -CCUGcGGCGACGCaca--GG-GGCGu-CCU- -5'
21723 3' -61.7 NC_004812.1 + 82817 0.66 0.695004
Target:  5'- gGGGCGCCggcgcccgcccGCUcGCG-GagCCCGCGGGc -3'
miRNA:   3'- -CCUGCGG-----------CGA-CGCaCagGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 33248 0.66 0.695004
Target:  5'- aGGACGg-GggGCGcGUCCCCGCcGGAg -3'
miRNA:   3'- -CCUGCggCgaCGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 128110 0.66 0.695004
Target:  5'- aGGugGCCGCggaGCccccuuUCCCCGCccgccgccGGGAu -3'
miRNA:   3'- -CCugCGGCGa--CGcac---AGGGGCG--------UCCU- -5'
21723 3' -61.7 NC_004812.1 + 2347 0.66 0.695004
Target:  5'- aGGACGg-GggGCGcGUCCCCGCcGGAg -3'
miRNA:   3'- -CCUGCggCgaCGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 27904 0.66 0.695004
Target:  5'- cGGGC-CCGCUGCGccgcgCCgCCGCcuGGAu -3'
miRNA:   3'- -CCUGcGGCGACGCaca--GG-GGCGu-CCU- -5'
21723 3' -61.7 NC_004812.1 + 122844 0.66 0.695004
Target:  5'- cGGcCGCCGagccCGUGagggCCCGCAGGAa -3'
miRNA:   3'- -CCuGCGGCgac-GCACag--GGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 129739 0.66 0.695004
Target:  5'- cGGACGCCGagccuggGCGUcccgguGUCCCgGUuuccGGGGu -3'
miRNA:   3'- -CCUGCGGCga-----CGCA------CAGGGgCG----UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.