miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 156453 0.68 0.884609
Target:  5'- -cGCGGCGGGccgcggGCGCGgcgGCGcGGCg -3'
miRNA:   3'- caCGCCGCUCua----CGCGUagaUGC-UCG- -5'
21726 3' -54.8 NC_004812.1 + 156446 0.68 0.850083
Target:  5'- -gGgGGCGGGGguucguucggggggGCGCGUUUggGCGGGCu -3'
miRNA:   3'- caCgCCGCUCUa-------------CGCGUAGA--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 156236 0.66 0.937997
Target:  5'- -cGCcGCGGGAUGCGCcg--GCG-GCg -3'
miRNA:   3'- caCGcCGCUCUACGCGuagaUGCuCG- -5'
21726 3' -54.8 NC_004812.1 + 156177 0.67 0.904564
Target:  5'- -cGCGGCGGGc-GCGCG-Cga-GAGCg -3'
miRNA:   3'- caCGCCGCUCuaCGCGUaGaugCUCG- -5'
21726 3' -54.8 NC_004812.1 + 155819 0.69 0.830339
Target:  5'- -gGCGGCGGGGgcgGCGgccCAUCUcccGCGGGg -3'
miRNA:   3'- caCGCCGCUCUa--CGC---GUAGA---UGCUCg -5'
21726 3' -54.8 NC_004812.1 + 155730 0.67 0.904564
Target:  5'- -gGgGGUGGGggGCGCGc--GCGGGCg -3'
miRNA:   3'- caCgCCGCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 155567 0.66 0.942719
Target:  5'- -aGgGGgGAGggGCGCGc--GCGGGCg -3'
miRNA:   3'- caCgCCgCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 155213 0.8 0.280235
Target:  5'- -gGCGGCGAGAggggGCGCGgcgCgggGCGGGCc -3'
miRNA:   3'- caCGCCGCUCUa---CGCGUa--Ga--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 155141 0.68 0.854842
Target:  5'- -gGCGGCGGGggGCcGgGUCga-GGGCg -3'
miRNA:   3'- caCGCCGCUCuaCG-CgUAGaugCUCG- -5'
21726 3' -54.8 NC_004812.1 + 154841 0.7 0.795139
Target:  5'- -cGuCGGCGcGggGCGCggCUGCGAGg -3'
miRNA:   3'- caC-GCCGCuCuaCGCGuaGAUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 154465 0.66 0.937997
Target:  5'- -gGCGaGCGAGGcgGCGCGgc--CGGGCu -3'
miRNA:   3'- caCGC-CGCUCUa-CGCGUagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 154166 0.67 0.891494
Target:  5'- -cGCGGCGAGgcGCacucgcaccGCGcCUGCGcGCg -3'
miRNA:   3'- caCGCCGCUCuaCG---------CGUaGAUGCuCG- -5'
21726 3' -54.8 NC_004812.1 + 153447 0.68 0.870161
Target:  5'- -gGgGGCGGGggGCGCGgggGgGGGCg -3'
miRNA:   3'- caCgCCGCUCuaCGCGUagaUgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 153357 0.73 0.595041
Target:  5'- -gGCGGCGGGGgcgcggGCGCccCUgGCGGGCg -3'
miRNA:   3'- caCGCCGCUCUa-----CGCGuaGA-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 153147 0.66 0.933033
Target:  5'- -gGCGGCGGG--GCGCGg--GCGGGg -3'
miRNA:   3'- caCGCCGCUCuaCGCGUagaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 152856 0.66 0.942719
Target:  5'- -gGCGGCGGGcUGgGCcugagcgGCGGGCc -3'
miRNA:   3'- caCGCCGCUCuACgCGuaga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152763 0.66 0.942719
Target:  5'- -cGCGGCGAccacgGCGCAg--AgGGGCg -3'
miRNA:   3'- caCGCCGCUcua--CGCGUagaUgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152649 0.66 0.947201
Target:  5'- -cGCGGCGGGGggGCGC-----CGGGCc -3'
miRNA:   3'- caCGCCGCUCUa-CGCGuagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152620 0.66 0.927826
Target:  5'- -gGCGGCGAGAgcagGUGCc----CGGGCc -3'
miRNA:   3'- caCGCCGCUCUa---CGCGuagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152566 0.68 0.862607
Target:  5'- cUGCGGCG-GAgGCGgAgcgGCGGGCg -3'
miRNA:   3'- cACGCCGCuCUaCGCgUagaUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.