miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 155213 0.8 0.280235
Target:  5'- -gGCGGCGAGAggggGCGCGgcgCgggGCGGGCc -3'
miRNA:   3'- caCGCCGCUCUa---CGCGUa--Ga--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2735 0.72 0.667262
Target:  5'- -cGCGGCGcAGGUcGCGCGcg-GCGGGCc -3'
miRNA:   3'- caCGCCGC-UCUA-CGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 56680 0.72 0.667262
Target:  5'- -cGCGGCGucGAcGCGCAUCUuCG-GCg -3'
miRNA:   3'- caCGCCGCu-CUaCGCGUAGAuGCuCG- -5'
21726 3' -54.8 NC_004812.1 + 122814 0.66 0.947201
Target:  5'- -gGCuGUGGGcgGCGCA---GCGGGCg -3'
miRNA:   3'- caCGcCGCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 120378 0.74 0.534089
Target:  5'- -cGCGGCcGGggGCGCGUacGCGGGCg -3'
miRNA:   3'- caCGCCGcUCuaCGCGUAgaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 100954 0.74 0.544117
Target:  5'- -cGUGGCGGGgcGCGCcgccgcggacGUCcGCGAGCg -3'
miRNA:   3'- caCGCCGCUCuaCGCG----------UAGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 146447 0.74 0.564349
Target:  5'- -cGCGGCGAGGauguUGCGCAggCUGgGGGg -3'
miRNA:   3'- caCGCCGCUCU----ACGCGUa-GAUgCUCg -5'
21726 3' -54.8 NC_004812.1 + 153357 0.73 0.595041
Target:  5'- -gGCGGCGGGGgcgcggGCGCccCUgGCGGGCg -3'
miRNA:   3'- caCGCCGCUCUa-----CGCGuaGA-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 38539 0.73 0.615653
Target:  5'- -gGCGGcCGGGGUcgggGCGCGaagCUGCGGGCc -3'
miRNA:   3'- caCGCC-GCUCUA----CGCGUa--GAUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 59710 0.72 0.646646
Target:  5'- -gGCGGCGAGcgGCGag---GCGGGCc -3'
miRNA:   3'- caCGCCGCUCuaCGCguagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 137804 0.72 0.636315
Target:  5'- -gGCGGCGAGG-GCGCcgCg--GAGCa -3'
miRNA:   3'- caCGCCGCUCUaCGCGuaGaugCUCG- -5'
21726 3' -54.8 NC_004812.1 + 150393 0.73 0.605337
Target:  5'- -cGCGGCGgcAGggGCgGCGUCcGCGGGCc -3'
miRNA:   3'- caCGCCGC--UCuaCG-CGUAGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 79436 0.78 0.353045
Target:  5'- -gGCGGCGGGGacgGCGCcgCcGCGGGCg -3'
miRNA:   3'- caCGCCGCUCUa--CGCGuaGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 20599 0.72 0.636315
Target:  5'- -gGUGGCGAGGacGCGCGcCUGCGAcuGCg -3'
miRNA:   3'- caCGCCGCUCUa-CGCGUaGAUGCU--CG- -5'
21726 3' -54.8 NC_004812.1 + 94337 0.77 0.394164
Target:  5'- uGUGCGGCGcGGccUGCGCGgg-GCGGGCg -3'
miRNA:   3'- -CACGCCGCuCU--ACGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 2253 0.73 0.605337
Target:  5'- -gGCGGCGGGGUcCGCGUCgGCGuccGCg -3'
miRNA:   3'- caCGCCGCUCUAcGCGUAGaUGCu--CG- -5'
21726 3' -54.8 NC_004812.1 + 143621 0.72 0.636315
Target:  5'- -gGCGGCGAGAgcgcgaGCGCGgcccCGGGCg -3'
miRNA:   3'- caCGCCGCUCUa-----CGCGUagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 15967 0.72 0.667262
Target:  5'- -cGUGGCGccgccgcgcGGcgGCGCGUCUAC-AGCa -3'
miRNA:   3'- caCGCCGC---------UCuaCGCGUAGAUGcUCG- -5'
21726 3' -54.8 NC_004812.1 + 135235 0.75 0.528103
Target:  5'- -cGCGGCGcGGAgcucGCGCGUCUACGcccgguuccgauacaAGCa -3'
miRNA:   3'- caCGCCGC-UCUa---CGCGUAGAUGC---------------UCG- -5'
21726 3' -54.8 NC_004812.1 + 82355 0.74 0.554206
Target:  5'- -cGCGGcCGGGGcgagGCGUAcCUGCGGGCg -3'
miRNA:   3'- caCGCC-GCUCUa---CGCGUaGAUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.