miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 58763 0.8 0.287605
Target:  5'- gCCGGCGGCGCCcggcgagcgagggcGCGGUGGGcuuUCCGGGc -3'
miRNA:   3'- -GGUCGCUGCGG--------------CGCUACCUu--AGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 152642 0.72 0.633264
Target:  5'- gCCGGCG-CGCgGCGGggGGGcgCCGGGc -3'
miRNA:   3'- -GGUCGCuGCGgCGCUa-CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 46673 0.72 0.653555
Target:  5'- gCCAG-GGCGCCGCGccGGAAguggcCCAGc -3'
miRNA:   3'- -GGUCgCUGCGGCGCuaCCUUa----GGUCu -5'
21727 5' -55.5 NC_004812.1 + 74260 0.66 0.942881
Target:  5'- cUCuGCGAgGCCGCGGgccucacggGGGgcGUCCuGAg -3'
miRNA:   3'- -GGuCGCUgCGGCGCUa--------CCU--UAGGuCU- -5'
21727 5' -55.5 NC_004812.1 + 62388 0.76 0.466074
Target:  5'- gCCGGCGACGCCGgCGA-GGAG--CAGAc -3'
miRNA:   3'- -GGUCGCUGCGGC-GCUaCCUUagGUCU- -5'
21727 5' -55.5 NC_004812.1 + 39272 0.74 0.523121
Target:  5'- gUCGGCGGcCGCCGgGGcccGGggUCCGGGg -3'
miRNA:   3'- -GGUCGCU-GCGGCgCUa--CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 75637 0.74 0.552645
Target:  5'- aCCAGCG-CGCCGCGgcGG--UCCgAGAg -3'
miRNA:   3'- -GGUCGCuGCGGCGCuaCCuuAGG-UCU- -5'
21727 5' -55.5 NC_004812.1 + 2287 0.74 0.562601
Target:  5'- aCgAGCGGCGCgGCGucGGggUCCGGc -3'
miRNA:   3'- -GgUCGCUGCGgCGCuaCCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 18364 0.73 0.592731
Target:  5'- aCCGGCGGCGCCGgGcccgcGGGccccacaucGUCCAGGc -3'
miRNA:   3'- -GGUCGCUGCGGCgCua---CCU---------UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 23514 0.72 0.633264
Target:  5'- gCGGCGGCGCCggcuuuaugccgGCGGUGGGggCgGGAc -3'
miRNA:   3'- gGUCGCUGCGG------------CGCUACCUuaGgUCU- -5'
21727 5' -55.5 NC_004812.1 + 31782 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 114739 0.73 0.592731
Target:  5'- uCCAGCGACGCCGgGAg-----CCGGGg -3'
miRNA:   3'- -GGUCGCUGCGGCgCUaccuuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 61875 0.78 0.354115
Target:  5'- cCCGGCGACcagaaagGUgGCGAggGGGAUCCAGAu -3'
miRNA:   3'- -GGUCGCUG-------CGgCGCUa-CCUUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 31834 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 81172 0.76 0.43878
Target:  5'- gCGGCGAcccggcCGCCGCGgcGGAgcugGUCCGGAc -3'
miRNA:   3'- gGUCGCU------GCGGCGCuaCCU----UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 21206 0.73 0.58265
Target:  5'- -aAGCGACGCCggaGCGugcGUGGAAcCCGGAa -3'
miRNA:   3'- ggUCGCUGCGG---CGC---UACCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 31886 0.72 0.633264
Target:  5'- uCCGGgGuCGCCGgGGguccugGGggUCCGGGg -3'
miRNA:   3'- -GGUCgCuGCGGCgCUa-----CCuuAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 86815 0.72 0.643414
Target:  5'- gCGGCGGCGaCGCGGUGGGAgaaAGAc -3'
miRNA:   3'- gGUCGCUGCgGCGCUACCUUaggUCU- -5'
21727 5' -55.5 NC_004812.1 + 17480 0.76 0.466074
Target:  5'- gCGGCgGAUGCCGCGGUGGcgcucCCGGAc -3'
miRNA:   3'- gGUCG-CUGCGGCGCUACCuua--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 29929 0.74 0.532899
Target:  5'- aCGGCGACGgCGCGAgggagcgGGGggCCGGGc -3'
miRNA:   3'- gGUCGCUGCgGCGCUa------CCUuaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.