miRNA display CGI


Results 1 - 20 of 556 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 156451 0.66 0.976452
Target:  5'- -cGCGCGGcGGGCcGCGgGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCUCGcUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 156312 0.67 0.950633
Target:  5'- ---gAgGGAGGGCgGGgGACGGGAgGGg -3'
miRNA:   3'- gaugUgCCUCUCG-CUgCUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 156283 0.78 0.42126
Target:  5'- -gACG-GGAGGGgGACGAgGAGACGGa -3'
miRNA:   3'- gaUGUgCCUCUCgCUGCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 156236 0.77 0.49413
Target:  5'- -gAgACGGAGAGCGG-GGCGGGAgGGg -3'
miRNA:   3'- gaUgUGCCUCUCGCUgCUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 156214 0.67 0.950633
Target:  5'- cCUGCGCgcguGGGGGGCGG-GGCGccGCGGg -3'
miRNA:   3'- -GAUGUG----CCUCUCGCUgCUGCucUGCC- -5'
21730 5' -54.2 NC_004812.1 + 156150 0.69 0.891737
Target:  5'- -gACGCGGGGcGCggGACGcGCGGGACcGGg -3'
miRNA:   3'- gaUGUGCCUCuCG--CUGC-UGCUCUG-CC- -5'
21730 5' -54.2 NC_004812.1 + 156052 0.66 0.961886
Target:  5'- -cACGCGGccgcgcgcgccGGGGCGGgaGGCGGGAgGGc -3'
miRNA:   3'- gaUGUGCC-----------UCUCGCUg-CUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 156033 0.67 0.954604
Target:  5'- -gGC-CGGGGGccGCGcCG-CGGGACGGg -3'
miRNA:   3'- gaUGuGCCUCU--CGCuGCuGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155876 0.66 0.961886
Target:  5'- -cGCGCGGcGGGgGAgGGgaGGGGCGGg -3'
miRNA:   3'- gaUGUGCCuCUCgCUgCUg-CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155804 0.67 0.950633
Target:  5'- -gACcccCGGccGGGCGGCGGCGGGgGCGGc -3'
miRNA:   3'- gaUGu--GCCu-CUCGCUGCUGCUC-UGCC- -5'
21730 5' -54.2 NC_004812.1 + 155701 0.77 0.475342
Target:  5'- -cGCGCGcGAGGGCGugGGgGAGGgGGg -3'
miRNA:   3'- gaUGUGC-CUCUCGCugCUgCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 155530 0.66 0.976452
Target:  5'- gUGCGCcagguacccaGGAGGGCGG-GA-GGGGCGGg -3'
miRNA:   3'- gAUGUG----------CCUCUCGCUgCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155419 0.7 0.863527
Target:  5'- -gGCGUGGuGgcGGCGGCGACGGcGACGGc -3'
miRNA:   3'- gaUGUGCCuC--UCGCUGCUGCU-CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155282 0.69 0.891737
Target:  5'- -aAC-CGGGGAGgGGCGggGCGcGGCGGg -3'
miRNA:   3'- gaUGuGCCUCUCgCUGC--UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155216 0.73 0.722714
Target:  5'- -gGCGagaGGGGGcGCGGCG-CGGGGCGGg -3'
miRNA:   3'- gaUGUg--CCUCU-CGCUGCuGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155151 0.71 0.806581
Target:  5'- -gGC-CGGgucgAGGGCGGuCGugGGGGCGGg -3'
miRNA:   3'- gaUGuGCC----UCUCGCU-GCugCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155078 0.7 0.87017
Target:  5'- -gGgGgGGGGGGCGGCGGCGGcaugcccucgcgcGGCGGc -3'
miRNA:   3'- gaUgUgCCUCUCGCUGCUGCU-------------CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 154948 0.72 0.779709
Target:  5'- -gACGCGGGGGGgGGgggaGGgGGGACGGg -3'
miRNA:   3'- gaUGUGCCUCUCgCUg---CUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 154891 0.66 0.965204
Target:  5'- -cGCGCGGGGccgGGCGGagucUGGCGgagucGGGCGGg -3'
miRNA:   3'- gaUGUGCCUC---UCGCU----GCUGC-----UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 154845 0.75 0.622552
Target:  5'- -gGCGCGGGGcGCGGCuGCGAGGgGGc -3'
miRNA:   3'- gaUGUGCCUCuCGCUGcUGCUCUgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.