miRNA display CGI


Results 1 - 20 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 3' -67 NC_004812.1 + 5129 0.66 0.474857
Target:  5'- gGGcGGGCGCGGA-GGCGggagggCCGCgGg- -3'
miRNA:   3'- -CC-CCCGCGCCUcCCGCag----GGCGgCag -5'
21731 3' -67 NC_004812.1 + 17874 0.66 0.474857
Target:  5'- cGGGGGCGacCGGccGGCacgccgcgggCCCGCCG-Cg -3'
miRNA:   3'- -CCCCCGC--GCCucCCGca--------GGGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 76543 0.66 0.474857
Target:  5'- cGGGGCGUGGAcgcGGGCc-UCgGCCGg- -3'
miRNA:   3'- cCCCCGCGCCU---CCCGcaGGgCGGCag -5'
21731 3' -67 NC_004812.1 + 129553 0.66 0.474857
Target:  5'- cGGcGGCgGCGGccgcGGCGUCgUCGUCGUCg -3'
miRNA:   3'- cCC-CCG-CGCCuc--CCGCAG-GGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 50356 0.66 0.474857
Target:  5'- -aGGGCcacGCGGuAGGGCGcCCCcgacGCCGg- -3'
miRNA:   3'- ccCCCG---CGCC-UCCCGCaGGG----CGGCag -5'
21731 3' -67 NC_004812.1 + 118408 0.66 0.474857
Target:  5'- uGGGGGuCGCGGAuGuGGa--CCUGCCGg- -3'
miRNA:   3'- -CCCCC-GCGCCU-C-CCgcaGGGCGGCag -5'
21731 3' -67 NC_004812.1 + 36030 0.66 0.474857
Target:  5'- gGGcGGGCGCGGA-GGCGggagggCCGCgGg- -3'
miRNA:   3'- -CC-CCCGCGCCUcCCGCag----GGCGgCag -5'
21731 3' -67 NC_004812.1 + 114675 0.66 0.474857
Target:  5'- -cGGGuCGCGGuccaGGGGCGgCCgcgggaccggaaUGCCGUCg -3'
miRNA:   3'- ccCCC-GCGCC----UCCCGCaGG------------GCGGCAG- -5'
21731 3' -67 NC_004812.1 + 30111 0.66 0.474857
Target:  5'- uGGGGCuGCGGGGcGCacGUCCCGCa--- -3'
miRNA:   3'- cCCCCG-CGCCUCcCG--CAGGGCGgcag -5'
21731 3' -67 NC_004812.1 + 48163 0.66 0.474857
Target:  5'- gGGGGGUGUGGAucgcgaaGGUGgCCuCGgCGUCg -3'
miRNA:   3'- -CCCCCGCGCCUc------CCGCaGG-GCgGCAG- -5'
21731 3' -67 NC_004812.1 + 4044 0.66 0.474857
Target:  5'- cGGcGGCgGCGGccgcGGCGUCgUCGUCGUCg -3'
miRNA:   3'- cCC-CCG-CGCCuc--CCGCAG-GGCGGCAG- -5'
21731 3' -67 NC_004812.1 + 107961 0.66 0.469674
Target:  5'- cGGcGaGGCGCgGGAucggauagagaggcgGGGCGuUCCCGCacgcgCGUCg -3'
miRNA:   3'- -CC-C-CCGCG-CCU---------------CCCGC-AGGGCG-----GCAG- -5'
21731 3' -67 NC_004812.1 + 42027 0.66 0.466234
Target:  5'- cGGGGGCGCGc--GGCGcCaagcgcaCGaCCGUCa -3'
miRNA:   3'- -CCCCCGCGCcucCCGCaGg------GC-GGCAG- -5'
21731 3' -67 NC_004812.1 + 12135 0.66 0.466234
Target:  5'- uGGGGGCGCGc--GGCGccgggCCCGCUc-- -3'
miRNA:   3'- -CCCCCGCGCcucCCGCa----GGGCGGcag -5'
21731 3' -67 NC_004812.1 + 106752 0.66 0.466234
Target:  5'- -cGGGCGCGGGGGG-GUCggaggaggggCGgCGUCg -3'
miRNA:   3'- ccCCCGCGCCUCCCgCAGg---------GCgGCAG- -5'
21731 3' -67 NC_004812.1 + 108517 0.66 0.466234
Target:  5'- cGGGGCGCacGGcGGCGg-CCGCCGa- -3'
miRNA:   3'- cCCCCGCGccUC-CCGCagGGCGGCag -5'
21731 3' -67 NC_004812.1 + 18821 0.66 0.466234
Target:  5'- cGGGuGUGCGGcGGGCGgcgguugCgCGCCGcCc -3'
miRNA:   3'- cCCC-CGCGCCuCCCGCa------GgGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 35915 0.66 0.462808
Target:  5'- gGGcGGGgGCGGcaguGGGGCGgcaggcggggcagCgCCGCgGUCa -3'
miRNA:   3'- -CC-CCCgCGCC----UCCCGCa------------G-GGCGgCAG- -5'
21731 3' -67 NC_004812.1 + 107364 0.66 0.4611
Target:  5'- uGGGGGCGgGGGgauggccggaacgguGGGUGagggggCCGCCGcCg -3'
miRNA:   3'- -CCCCCGCgCCU---------------CCCGCag----GGCGGCaG- -5'
21731 3' -67 NC_004812.1 + 147744 0.66 0.457694
Target:  5'- cGGGGUccGCGGgacgcGGGGC-UCCCGCgGg- -3'
miRNA:   3'- cCCCCG--CGCC-----UCCCGcAGGGCGgCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.