miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21731 5' -54.3 NC_004812.1 + 103855 0.66 0.954058
Target:  5'- gUUGGCGGgaagcccggaaaacAGGUCCUCGU-UCCA-GCu -3'
miRNA:   3'- -AACCGCCa-------------UCUAGGAGUAgAGGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 77405 0.66 0.952436
Target:  5'- -cGGCGG-GGG-CCUCcagGUCUcgcCCGCGCu -3'
miRNA:   3'- aaCCGCCaUCUaGGAG---UAGA---GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 136366 0.66 0.952436
Target:  5'- -cGGCGGgacccaAGGUCC-CGgcggCCGCGCu -3'
miRNA:   3'- aaCCGCCa-----UCUAGGaGUaga-GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 122426 0.66 0.952025
Target:  5'- -cGcGCGGUGGGcCCgggcggCGUCUCCucgggcggcggggGCGCg -3'
miRNA:   3'- aaC-CGCCAUCUaGGa-----GUAGAGG-------------UGCG- -5'
21731 5' -54.3 NC_004812.1 + 153327 0.66 0.952025
Target:  5'- -cGcGCGGUGGGcCCgggcggCGUCUCCucgggcggcggggGCGCg -3'
miRNA:   3'- aaC-CGCCAUCUaGGa-----GUAGAGG-------------UGCG- -5'
21731 5' -54.3 NC_004812.1 + 19858 0.66 0.948215
Target:  5'- -aGGCGGUcc-UCUUCGUC-CCGgGCg -3'
miRNA:   3'- aaCCGCCAucuAGGAGUAGaGGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 62087 0.66 0.948215
Target:  5'- -cGGCGGccccgAGGUCCccCGUCcaccagaaCCGCGCg -3'
miRNA:   3'- aaCCGCCa----UCUAGGa-GUAGa-------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 142417 0.66 0.948215
Target:  5'- cUGGCGcGgcGAcgcaguugUCCgcgCGUCggCCGCGCg -3'
miRNA:   3'- aACCGC-CauCU--------AGGa--GUAGa-GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 105770 0.66 0.943753
Target:  5'- -gGGCGGcggGGAUCCaCAguagCUCCcguCGCc -3'
miRNA:   3'- aaCCGCCa--UCUAGGaGUa---GAGGu--GCG- -5'
21731 5' -54.3 NC_004812.1 + 49499 0.66 0.943753
Target:  5'- aUUGGCgcuggGGUGGGacggCCUCGUCa-CACGCc -3'
miRNA:   3'- -AACCG-----CCAUCUa---GGAGUAGagGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 25073 0.66 0.942832
Target:  5'- -cGGCGGcGGGcUCCUCGaCggggcggcgccgCCGCGCg -3'
miRNA:   3'- aaCCGCCaUCU-AGGAGUaGa-----------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 150582 0.66 0.942832
Target:  5'- -cGGCGGcGGGcUCCUCGaCggggcggcgccgCCGCGCg -3'
miRNA:   3'- aaCCGCCaUCU-AGGAGUaGa-----------GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 100794 0.66 0.942832
Target:  5'- gUGGCGGccucgggcccgaAGA-CCUCGUuCUCgGCGCu -3'
miRNA:   3'- aACCGCCa-----------UCUaGGAGUA-GAGgUGCG- -5'
21731 5' -54.3 NC_004812.1 + 153740 0.66 0.939048
Target:  5'- -cGGCGGUgccggcgcgcacGGcGUCCUCGgcgUCgcgCCGCGUg -3'
miRNA:   3'- aaCCGCCA------------UC-UAGGAGU---AGa--GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 122839 0.66 0.939048
Target:  5'- -cGGCGGUgccggcgcgcacGGcGUCCUCGgcgUCgcgCCGCGUg -3'
miRNA:   3'- aaCCGCCA------------UC-UAGGAGU---AGa--GGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 10801 0.66 0.939048
Target:  5'- -cGGCGGgg---CCgcaCGUCUCCGCGa -3'
miRNA:   3'- aaCCGCCaucuaGGa--GUAGAGGUGCg -5'
21731 5' -54.3 NC_004812.1 + 77118 0.66 0.934096
Target:  5'- cUUGGCcuGGUGGAgcgcgUCCUCGg--CCAgGCg -3'
miRNA:   3'- -AACCG--CCAUCU-----AGGAGUagaGGUgCG- -5'
21731 5' -54.3 NC_004812.1 + 135932 0.66 0.934096
Target:  5'- -aGGCGGcGGcguccgccaccUCCUCGcUCUCCcACGCg -3'
miRNA:   3'- aaCCGCCaUCu----------AGGAGU-AGAGG-UGCG- -5'
21731 5' -54.3 NC_004812.1 + 74370 0.66 0.934096
Target:  5'- -gGGCGGcgGGGUCC-CG-C-CCGCGCc -3'
miRNA:   3'- aaCCGCCa-UCUAGGaGUaGaGGUGCG- -5'
21731 5' -54.3 NC_004812.1 + 146907 0.66 0.933076
Target:  5'- -gGGCGGgcGGUCCgggucgCGUUUCCucuggguuuccuCGCg -3'
miRNA:   3'- aaCCGCCauCUAGGa-----GUAGAGGu-----------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.