miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21732 3' -58 NC_004812.1 + 35554 0.66 0.889391
Target:  5'- gCGggCGggGCccggauagagggaggGGGCGGCGGGGGcACc -3'
miRNA:   3'- gGCa-GCaaCGa--------------UCCGCUGCCCCC-UGc -5'
21732 3' -58 NC_004812.1 + 123122 0.66 0.888736
Target:  5'- gCCGUCGgcgGCggcGGCGucggagGCGGGGucgucgucGACGa -3'
miRNA:   3'- -GGCAGCaa-CGau-CCGC------UGCCCC--------CUGC- -5'
21732 3' -58 NC_004812.1 + 155283 0.66 0.888736
Target:  5'- aCCGgggaggggCGggGCgcGGCGGggccCGGGGGuCGg -3'
miRNA:   3'- -GGCa-------GCaaCGauCCGCU----GCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 71403 0.66 0.888736
Target:  5'- -gGUCGcaGC-GGGCG-CGGGGGAa- -3'
miRNA:   3'- ggCAGCaaCGaUCCGCuGCCCCCUgc -5'
21732 3' -58 NC_004812.1 + 19137 0.66 0.888736
Target:  5'- gCGUgGgcgGCcAGcGCcGCGGGGGGCGc -3'
miRNA:   3'- gGCAgCaa-CGaUC-CGcUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 79243 0.66 0.888736
Target:  5'- gCUGgCGUcGCUGGGCGACGccgcgggccaGGGGCu -3'
miRNA:   3'- -GGCaGCAaCGAUCCGCUGCc---------CCCUGc -5'
21732 3' -58 NC_004812.1 + 29775 0.66 0.888736
Target:  5'- aCCGgggaggggCGggGCgcGGCGGggccCGGGGGuCGg -3'
miRNA:   3'- -GGCa-------GCaaCGauCCGCU----GCCCCCuGC- -5'
21732 3' -58 NC_004812.1 + 102943 0.66 0.888736
Target:  5'- gCCG-CGg----GGGUGGCgGGGGGGCGu -3'
miRNA:   3'- -GGCaGCaacgaUCCGCUG-CCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 122357 0.66 0.888736
Target:  5'- cCCGgCGgggGCcgGGGCG-CGGGGcGCGg -3'
miRNA:   3'- -GGCaGCaa-CGa-UCCGCuGCCCCcUGC- -5'
21732 3' -58 NC_004812.1 + 153258 0.66 0.888736
Target:  5'- cCCGgCGgggGCcgGGGCG-CGGGGcGCGg -3'
miRNA:   3'- -GGCaGCaa-CGa-UCCGCuGCCCCcUGC- -5'
21732 3' -58 NC_004812.1 + 96335 0.66 0.888736
Target:  5'- aCGgCGggGCcggaaAGGCGGCccaGGGGGGCu -3'
miRNA:   3'- gGCaGCaaCGa----UCCGCUG---CCCCCUGc -5'
21732 3' -58 NC_004812.1 + 154023 0.66 0.888736
Target:  5'- gCCGUCGgcgGCggcGGCGucggagGCGGGGucgucgucGACGa -3'
miRNA:   3'- -GGCAGCaa-CGau-CCGC------UGCCCC--------CUGC- -5'
21732 3' -58 NC_004812.1 + 145034 0.66 0.888736
Target:  5'- cCCGgcgagcgCGgagGCggGGGCGGCGGcGGACc -3'
miRNA:   3'- -GGCa------GCaa-CGa-UCCGCUGCCcCCUGc -5'
21732 3' -58 NC_004812.1 + 13017 0.66 0.888736
Target:  5'- uCCGUCGggGCgacucCGGCGGGGucCGu -3'
miRNA:   3'- -GGCAGCaaCGaucc-GCUGCCCCcuGC- -5'
21732 3' -58 NC_004812.1 + 18364 0.66 0.888078
Target:  5'- aCCGgCGgcGCcgggcccgcGGGCcccacaucguccaGGCGGGGGACGg -3'
miRNA:   3'- -GGCaGCaaCGa--------UCCG-------------CUGCCCCCUGC- -5'
21732 3' -58 NC_004812.1 + 16841 0.66 0.888078
Target:  5'- gCCGcCGcccUUAGGCGcgcggucGCGGGGGACc -3'
miRNA:   3'- -GGCaGCaacGAUCCGC-------UGCCCCCUGc -5'
21732 3' -58 NC_004812.1 + 54559 0.66 0.882065
Target:  5'- uCCGaCGgcGCcgGGGCGccGCGGGaGACGg -3'
miRNA:   3'- -GGCaGCaaCGa-UCCGC--UGCCCcCUGC- -5'
21732 3' -58 NC_004812.1 + 155808 0.66 0.882065
Target:  5'- cCCGgccggGC--GGCGGCGGGGGcgGCGg -3'
miRNA:   3'- -GGCagcaaCGauCCGCUGCCCCC--UGC- -5'
21732 3' -58 NC_004812.1 + 124907 0.66 0.882065
Target:  5'- cCCGgccggGC--GGCGGCGGGGGcgGCGg -3'
miRNA:   3'- -GGCagcaaCGauCCGCUGCCCCC--UGC- -5'
21732 3' -58 NC_004812.1 + 24773 0.66 0.882065
Target:  5'- gCGUCGaUGCgcaccgGGGUGAUGaucaGGGcGACGg -3'
miRNA:   3'- gGCAGCaACGa-----UCCGCUGC----CCC-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.